Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 9.5e-159 563.9 391 100.0
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.7e-75 287.3 389 58.1
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.6e-73 280.8 383 57.7
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 1.4e-72 277.7 387 61.2
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 4.0e-72 276.2 397 56.7
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.1e-71 274.6 397 56.7
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.7e-71 272.3 398 61.8
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 9.7e-71 271.6 399 53.1
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 8.2e-70 268.5 406 59.9
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.2e-68 264.6 391 60.4
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-68 264.6 397 52.4
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.6e-68 264.2 391 60.9
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.6e-68 264.2 393 51.9
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 6.5e-67 258.8 384 52.3
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.1e-66 258.1 323 58.5
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.1e-66 258.1 384 56.8
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 3.2e-66 256.5 397 54.9
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 5.5e-66 255.8 395 46.1
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.7e-65 253.4 328 51.2
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 3.6e-65 253.1 380 54.2
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 4.7e-65 252.7 388 53.9
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.3e-64 250.4 385 52.5
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 6.8e-64 248.8 386 48.4
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 2.0e-63 247.3 390 56.7
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.6e-63 246.9 396 45.5
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.7e-62 244.2 382 62.3
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.8e-62 243.4 391 49.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 4.8e-62 242.7 377 48.0
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 4.8e-62 242.7 391 49.6
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.4e-61 241.1 360 51.9
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 5.4e-61 239.2 396 47.0
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.0e-61 238.8 396 48.5
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 2.0e-60 237.3 393 56.0
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 3.5e-60 236.5 360 58.3
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 3.5e-60 236.5 336 60.1
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 3.5e-60 236.5 392 46.7
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 7.7e-60 235.3 385 50.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 6.5e-59 232.3 364 55.2
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.1e-58 231.5 394 45.2
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.5e-58 231.1 382 45.3
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.5e-58 231.1 378 52.1
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 2.5e-58 230.3 362 51.4
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 9.5e-58 228.4 384 52.9
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 3.6e-57 226.5 377 58.6
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 6.1e-57 225.7 360 51.9
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 1.0e-56 224.9 386 44.8
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 2.3e-56 223.8 396 47.0
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.0e-56 223.0 360 54.7
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 5.2e-56 222.6 360 51.4
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 6.8e-56 222.2 398 50.5
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 6.8e-56 222.2 380 53.2
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 6.8e-56 222.2 395 46.6
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 8.8e-56 221.9 397 47.9
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.2e-55 221.5 409 52.1
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.0e-55 220.7 393 41.2
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 2.0e-55 220.7 396 49.2
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.0e-55 220.7 397 53.1
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 2.6e-55 220.3 396 49.2
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 2.6e-55 220.3 363 47.9
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.4e-55 219.9 410 48.0
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 4.4e-55 219.5 365 55.3
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 4.4e-55 219.5 391 53.5
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 7.5e-55 218.8 396 50.5
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.7e-54 217.6 333 54.7
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 2.2e-54 217.2 353 45.3
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 2.8e-54 216.9 333 52.3
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 3.7e-54 216.5 396 50.8
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 3.7e-54 216.5 396 50.8
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 3.7e-54 216.5 396 50.8
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 7.0e-53 212.2 350 50.0
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 7.0e-53 212.2 345 50.1
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.0e-52 210.7 365 53.4
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.5e-52 209.9 391 50.6
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.0e-51 208.4 382 49.5
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 1.7e-51 207.6 365 56.4
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 8.6e-51 205.3 400 47.2
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.5e-50 204.5 377 41.6
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.9e-50 204.1 365 55.3
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.5e-50 203.8 340 50.6
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 3.3e-50 203.4 370 54.6
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.3e-50 203.4 408 44.9
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 4.3e-50 203.0 383 46.0
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 4.3e-50 203.0 369 45.3
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 7.3e-50 202.2 389 46.0
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.2e-49 201.4 397 45.3
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.6e-49 201.1 377 46.7
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 1.6e-49 201.1 359 48.5
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.1e-49 200.7 397 54.9
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.0e-49 198.7 397 54.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.0e-48 198.4 356 48.6
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.0e-48 198.4 399 48.6
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.0e-48 198.4 252 50.4
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.4e-48 198.0 392 42.1
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.8e-48 197.6 393 42.7
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 6.8e-48 195.7 396 43.7
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 7.5e-47 192.2 396 43.4
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 7.5e-47 192.2 308 51.3
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.3e-46 191.4 387 39.8
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.7e-46 189.9 356 48.3
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 4.9e-46 189.5 394 39.1
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.8e-45 187.6 396 44.7
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.8e-45 187.6 356 47.8
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 5.4e-45 186.0 323 50.8
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.4e-45 186.0 385 40.0
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.0e-45 185.7 386 44.8
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.2e-44 184.9 418 45.5
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.0e-43 181.8 306 57.5
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.9e-42 177.6 334 47.3
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.9e-42 177.6 395 43.0
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 5.6e-42 176.0 386 41.7
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.6e-41 174.5 322 47.8
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 8.0e-41 172.2 195 56.4
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.8e-40 171.0 365 36.4
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.1e-40 170.2 434 43.1
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 5.2e-40 169.5 366 36.6
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 2.9e-38 163.7 213 50.2
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 6.4e-38 162.5 374 35.6
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 9.2e-37 158.7 361 47.4
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.6e-36 157.9 312 42.9
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 3.9e-35 153.3 344 41.6
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 6.6e-35 152.5 365 43.3
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 8.6e-35 152.1 368 35.3
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.1e-34 151.8 368 38.0
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.5e-34 150.6 357 51.0
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.6e-34 149.4 235 57.0
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.2e-33 148.3 332 38.3
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.1e-32 145.2 303 44.9
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-32 145.2 151 55.0
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 3.4e-31 140.2 393 45.8
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 4.4e-31 139.8 188 44.7
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.7e-30 136.7 344 40.4
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.4e-29 134.8 149 53.7
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.2e-29 133.7 161 48.4
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.2e-29 133.7 294 42.5
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 9.2e-29 132.1 355 34.4
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.3e-27 128.3 336 35.4
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 5.1e-27 126.3 262 35.5
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 2.5e-26 124.0 312 43.3
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.3e-26 123.6 125 56.8
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 1.1e-24 118.6 193 43.0
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 3.1e-24 117.1 397 34.0
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 3.1e-24 117.1 232 50.0
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.5e-23 114.8 382 33.0
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 4.9e-22 109.8 286 35.0
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-21 108.6 301 44.5
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.4e-21 108.2 330 38.5
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.9e-21 107.8 374 35.8
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 6.2e-17 92.8 221 33.5
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 8.4e-14 82.4 191 36.6
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.1e-13 82.0 367 27.5
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 1.1e-10 72.0 169 34.9
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 2.5e-10 70.9 149 38.3
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 2.5e-10 70.9 348 39.7
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.8e-07 59.7 94 48.9
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 1.7e-06 58.2 74 51.4


User provided reference genes

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