Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 0.0e+00 1179.5 609 100.0
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.4e-262 908.7 558 82.3
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.3e-259 898.3 621 76.0
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 9.6e-259 896.7 621 75.7
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 3.1e-257 891.7 524 84.9
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 4.0e-257 891.3 525 85.0
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.6e-256 888.6 526 84.8
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.6e-256 887.1 527 84.3
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.3e-255 886.3 522 84.9
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 4.9e-255 884.4 521 85.4
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 6.5e-255 884.0 586 77.5
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 6.5e-255 884.0 527 83.9
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 8.4e-255 883.6 523 83.9
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 3.5e-253 878.2 524 84.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.6e-253 877.9 522 84.1
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 6.0e-253 877.5 525 84.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.3e-252 875.5 526 83.3
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.0e-252 875.2 519 84.8
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.9e-252 874.8 519 84.8
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.1e-252 874.4 522 84.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 6.7e-252 874.0 555 80.0
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 8.7e-252 873.6 526 82.7
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.5e-251 872.8 526 83.7
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.1e-250 869.0 518 84.2
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 4.8e-250 867.8 518 83.8
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.1e-249 866.7 538 82.2
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.8e-249 865.9 526 82.3
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 2.4e-249 865.5 518 83.6
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.1e-249 864.8 519 83.8
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 9.0e-249 863.6 592 75.2
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.5e-248 862.8 539 81.3
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.5e-248 862.8 539 81.3
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.0e-248 862.4 601 75.4
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 2.0e-248 862.4 519 83.6
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 3.4e-248 861.7 521 81.8
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 7.6e-248 860.5 538 81.4
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.3e-247 859.8 522 82.4
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.7e-247 859.4 524 81.7
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.2e-247 859.0 527 82.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.2e-247 859.0 521 82.3
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.9e-247 858.6 517 83.0
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 6.5e-247 857.4 526 82.1
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.4e-246 856.3 520 81.3
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 5.5e-246 854.4 537 81.8
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.2e-245 853.2 520 82.3
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.1e-245 852.4 525 81.5
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.1e-245 852.4 524 81.3
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 6.1e-245 850.9 519 81.9
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 7.9e-245 850.5 522 81.6
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.3e-244 849.0 527 81.2
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 2.3e-244 849.0 520 81.9
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 2.3e-244 849.0 520 81.9
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 3.0e-244 848.6 521 81.2
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 5.1e-244 847.8 520 81.5
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.5e-243 846.3 520 81.7
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.5e-243 845.5 520 81.3
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.4e-243 844.0 524 80.7
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.6e-242 842.8 520 81.5
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.2e-242 842.4 524 80.7
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.8e-242 842.0 520 80.8
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.8e-242 842.0 528 80.7
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.8e-242 841.3 524 82.1
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 8.2e-242 840.5 528 80.7
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 2.6e-240 835.5 518 80.3
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.4e-240 835.1 523 80.9
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 4.5e-240 834.7 530 80.6
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 7.7e-240 833.9 526 78.1
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 7.7e-240 833.9 520 80.8
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.3e-239 833.2 530 80.4
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.2e-239 832.4 520 80.0
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 9.4e-238 827.0 524 80.3
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.1e-237 825.9 522 79.1
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 2.3e-236 822.4 519 78.6
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 5.1e-236 821.2 525 78.3
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 5.1e-236 821.2 530 78.1
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 6.7e-236 820.8 518 79.0
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 8.8e-236 820.5 522 78.7
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.3e-234 816.6 521 78.3
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 4.8e-234 814.7 518 79.2
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.4e-233 812.4 518 78.8
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 6.5e-231 804.3 524 77.1
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.2e-230 802.0 522 76.2
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.2e-230 802.0 522 76.2
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.7e-229 798.1 526 76.4
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.8e-228 796.2 522 76.8
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.2e-224 783.5 524 75.6
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.6e-224 783.1 525 75.2
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 2.0e-224 782.7 522 76.1
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.6e-224 782.3 524 76.3
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 4.5e-224 781.6 522 76.1
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 4.5e-224 781.6 522 76.1
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.3e-223 780.0 522 75.9
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.3e-223 780.0 522 75.9
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 6.5e-223 777.7 524 75.4
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 8.5e-223 777.3 518 75.1
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.5e-222 775.8 462 83.8
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.2e-222 775.0 525 75.0
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 7.2e-222 774.2 519 75.9
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.2e-221 773.5 516 76.6
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.2e-221 773.5 517 76.2
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.6e-221 773.1 517 76.2
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.1e-221 772.7 518 75.7
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 6.7e-220 767.7 588 68.4
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 2.0e-219 766.1 517 76.2
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 9.7e-219 763.8 517 75.2
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 2.8e-218 762.3 527 72.9
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.7e-218 761.9 536 72.9
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 6.3e-218 761.1 527 72.5
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 9.1e-217 757.3 524 73.1
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-216 756.9 528 72.7
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 3.5e-216 755.4 532 72.2
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 5.9e-216 754.6 534 72.1
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.0e-215 753.8 522 73.0
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.9e-215 752.3 514 73.3
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 6.5e-215 751.1 518 73.9
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 7.2e-214 747.7 518 75.1
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.2e-211 740.3 527 73.8
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.5e-211 740.0 525 73.1
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.8e-210 734.9 526 70.2
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.4e-209 732.6 524 70.4
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 5.4e-209 731.5 525 72.2
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 2.0e-208 729.6 446 80.0
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.5e-206 722.6 522 71.1
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.0e-205 717.6 520 71.3
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.0e-204 717.2 526 69.4
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 2.2e-202 709.5 471 76.9
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.7e-202 708.8 520 70.6
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-201 706.8 521 69.3
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 7.7e-200 701.0 408 85.5
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.9e-198 696.4 416 82.9
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 9.5e-198 694.1 523 67.5
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.2e-197 693.7 422 81.8
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.1e-197 691.4 521 68.1
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 8.0e-197 691.0 521 66.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.2e-196 688.3 414 83.6
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.9e-196 687.6 615 60.0
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-195 686.8 529 66.7
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 3.7e-194 682.2 521 69.1
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.7e-194 682.2 529 66.4
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.2e-188 661.8 495 67.7
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.4e-187 658.7 521 66.8
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.2e-186 656.4 529 64.5
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.1e-185 652.1 519 65.5
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.9e-178 629.4 528 61.4
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 2.5e-166 589.7 513 57.7
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 5.8e-155 552.0 412 70.1
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 3.8e-154 549.3 375 76.5
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 8.4e-154 548.1 527 58.8
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.6e-152 542.3 475 57.9
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.2e-129 466.1 464 56.0
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.3e-117 427.9 262 82.8
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.3e-114 417.9 266 80.5
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 5.5e-97 359.4 240 74.6
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.4e-68 264.2 155 86.5
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.0e-66 257.3 145 88.3
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.1e-49 202.2 197 54.8
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.6e-48 198.4 197 52.8
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 1.2e-46 192.2 163 59.5
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 7.6e-46 189.5 163 58.9
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.5e-38 165.2 132 64.4
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.6e-38 164.5 98 83.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.4e-23 115.5 88 64.8
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.8e-21 107.5 88 60.2
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 3.8e-21 107.5 116 53.4
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-20 105.1 313 28.1
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-20 105.1 321 27.1
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.1e-18 97.1 60 81.7
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 9.7e-17 92.8 86 54.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.8e-16 91.3 124 40.3
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-15 89.0 187 30.5
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.4e-15 89.0 100 52.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 4.5e-14 84.0 70 71.4
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.6e-14 83.2 510 23.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.4e-09 66.6 77 54.5
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 4.5e-06 57.4 54 48.1


User provided reference genes

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