Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 1.3e-54 216.1 106 100.0
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 1.1e-19 100.1 104 50.0
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.8e-19 99.4 106 46.2
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 4.0e-19 98.2 98 48.0
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 8.9e-19 97.1 102 49.0
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-18 96.7 102 48.0
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-18 96.7 102 49.0
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-18 96.7 104 51.0
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.5e-18 96.3 104 50.0
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.5e-18 96.3 100 49.0
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.0e-18 95.9 103 46.6
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.6e-18 95.5 106 49.1
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 2.6e-18 95.5 106 45.3
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 7.5e-18 94.0 93 53.8
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.5e-18 94.0 104 42.3
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.5e-18 94.0 102 52.0
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.3e-17 93.2 104 46.2
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.7e-17 92.8 103 43.7
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.7e-17 92.8 104 47.1
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.7e-17 92.8 104 47.1
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.7e-17 92.8 106 47.2
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-17 92.0 93 52.7
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 4.9e-17 91.3 95 50.5
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 4.9e-17 91.3 103 45.6
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.4e-17 90.9 102 47.1
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 6.4e-17 90.9 106 48.1
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.4e-17 90.9 103 42.7
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-16 90.1 104 40.4
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.1e-16 90.1 106 43.4
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.9e-16 89.4 101 44.6
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 1.9e-16 89.4 102 45.1
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 2.4e-16 89.0 103 46.6
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-16 89.0 104 44.2
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.2e-16 88.6 94 47.9
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-16 88.6 102 42.2
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.2e-16 88.6 103 45.6
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 3.2e-16 88.6 102 40.2
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 4.1e-16 88.2 102 44.1
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 4.1e-16 88.2 102 40.2
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.1e-16 88.2 102 45.1
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.1e-16 88.2 102 45.1
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 4.1e-16 88.2 104 46.2
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.4e-16 87.8 89 43.8
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 5.4e-16 87.8 107 43.9
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 9.2e-16 87.0 94 45.7
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 9.2e-16 87.0 107 43.0
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.2e-16 87.0 86 50.0
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 9.2e-16 87.0 106 45.3
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 9.2e-16 87.0 55 67.3
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.6e-15 86.3 105 44.8
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-15 86.3 97 41.2
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.6e-15 86.3 101 49.5
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.1e-15 85.9 89 43.8
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 2.1e-15 85.9 104 46.2
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 2.1e-15 85.9 104 44.2
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 2.1e-15 85.9 104 44.2
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 2.1e-15 85.9 106 37.7
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.5e-15 85.1 99 43.4
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 3.5e-15 85.1 103 42.7
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 3.5e-15 85.1 104 43.3
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.6e-15 84.7 104 45.2
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 6.0e-15 84.3 104 39.4
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 6.0e-15 84.3 59 57.6
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 6.0e-15 84.3 59 57.6
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.0e-14 83.6 55 58.2
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.0e-14 83.6 104 43.3
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.0e-14 83.6 91 45.1
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-14 83.2 103 43.7
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 1.7e-14 82.8 104 44.2
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 1.7e-14 82.8 102 41.2
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.7e-14 82.8 103 40.8
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.9e-14 81.6 103 39.8
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 5.1e-14 81.3 85 43.5
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 5.1e-14 81.3 102 44.1
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 5.1e-14 81.3 106 40.6
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.6e-14 80.9 99 40.4
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.1e-13 80.1 106 41.5
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.1e-13 80.1 94 41.5
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-13 80.1 106 43.4
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.5e-13 79.7 98 42.9
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.5e-13 79.7 98 42.9
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-13 79.7 130 36.2
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-13 79.3 49 63.3
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.5e-13 79.0 103 41.7
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 3.3e-13 78.6 91 48.4
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 4.3e-13 78.2 78 50.0
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.3e-13 78.2 94 43.6
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 4.3e-13 78.2 93 47.3
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 5.6e-13 77.8 104 38.5
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 5.6e-13 77.8 102 39.2
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 7.3e-13 77.4 106 36.8
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 7.3e-13 77.4 102 44.1
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 7.3e-13 77.4 97 42.3
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 7.3e-13 77.4 83 43.4
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 7.3e-13 77.4 83 43.4
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 7.3e-13 77.4 103 38.8
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 9.5e-13 77.0 73 49.3
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.2e-12 76.6 89 40.4
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.6e-12 76.3 94 42.6
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-12 76.3 90 43.3
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-12 76.3 98 40.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-12 76.3 90 43.3
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 1.6e-12 76.3 104 39.4
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.8e-12 75.5 88 42.0
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.6e-12 75.1 94 40.4
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 4.7e-12 74.7 91 46.2
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 6.2e-12 74.3 102 36.3
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.1e-12 73.9 101 39.6
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.1e-11 73.6 51 56.9
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.1e-11 73.6 51 56.9
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-11 73.2 104 35.6
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.8e-11 72.8 50 56.0
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 2.3e-11 72.4 57 52.6
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 3.1e-11 72.0 92 34.8
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 3.1e-11 72.0 91 44.0
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 5.2e-11 71.2 54 50.0
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.2e-11 71.2 97 33.0
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.2e-11 71.2 87 42.5
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.2e-11 71.2 89 40.4
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.8e-11 70.9 80 42.5
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.8e-11 70.9 91 41.8
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 6.8e-11 70.9 49 61.2
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.9e-11 70.5 51 51.0
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.9e-11 70.5 104 34.6
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 2.0e-10 69.3 53 56.6
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-10 69.3 103 45.6
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 2.6e-10 68.9 103 39.8
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-10 68.9 103 40.8
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 2.6e-10 68.9 121 33.1
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 3.4e-10 68.6 101 34.7
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-10 68.6 90 37.8
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-10 68.6 90 37.8
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-10 68.6 101 34.7
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.4e-10 68.6 51 45.1
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 4.4e-10 68.2 51 54.9
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 4.4e-10 68.2 102 38.2
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 5.8e-10 67.8 52 50.0
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-10 67.8 94 36.2
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 5.8e-10 67.8 49 53.1
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 5.8e-10 67.8 93 40.9
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 7.6e-10 67.4 51 49.0
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 7.6e-10 67.4 55 45.5
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 7.6e-10 67.4 104 36.5
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 7.6e-10 67.4 103 35.9
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 9.9e-10 67.0 49 49.0
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-09 66.6 103 38.8
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-09 66.6 97 34.0
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-09 66.6 97 34.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 1.3e-09 66.6 51 49.0
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.7e-09 66.2 97 34.0
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.7e-09 66.2 97 34.0
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-09 66.2 90 35.6
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 2.2e-09 65.9 54 48.1
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 3.8e-09 65.1 49 49.0
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 3.8e-09 65.1 90 37.8
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 3.8e-09 65.1 49 49.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 3.8e-09 65.1 49 49.0
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 4.9e-09 64.7 104 35.6
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 6.4e-09 64.3 49 46.9
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.4e-09 63.9 124 30.6
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 8.4e-09 63.9 83 34.9
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 8.4e-09 63.9 104 30.8
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.4e-09 63.9 64 42.2
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-08 63.5 55 47.3
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 1.9e-08 62.8 101 36.6
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.9e-08 62.8 91 33.0
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-08 62.4 103 35.9
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 2.4e-08 62.4 102 33.3
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 3.2e-08 62.0 103 35.9
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 4.1e-08 61.6 90 44.4
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 4.1e-08 61.6 97 32.0
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 4.1e-08 61.6 89 36.0
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.4e-08 61.2 42 59.5
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.2e-08 60.5 99 32.3
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 2.1e-07 59.3 55 41.8
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.7e-07 58.9 101 31.7
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-07 58.5 103 35.0
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 4.6e-07 58.2 45 55.6
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 6.0e-07 57.8 49 40.8
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-06 56.6 47 42.6
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.3e-06 55.8 54 48.1
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.9e-06 55.1 56 46.4
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 5.1e-06 54.7 39 53.8


User provided reference genes

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