Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.1e-122 443.4 236 100.0
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 7.6e-119 430.6 236 97.5
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 5.6e-98 361.3 221 81.4
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.6e-97 359.8 236 76.3
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.6e-97 359.8 216 83.8
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.8e-97 359.0 216 81.9
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 2.6e-95 352.4 215 82.8
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.3e-94 350.1 216 82.9
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.8e-94 348.6 213 81.7
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 4.9e-94 348.2 214 80.4
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 6.5e-94 347.8 216 78.7
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 9.3e-93 344.0 216 78.7
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 9.3e-93 344.0 213 79.8
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.2e-92 343.6 214 79.9
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.6e-92 343.2 215 79.1
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 2.1e-92 342.8 222 80.2
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 4.6e-92 341.7 216 77.3
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 6.0e-92 341.3 213 78.9
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 7.9e-92 340.9 213 80.3
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.8e-91 339.7 212 80.7
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.8e-91 339.7 216 78.7
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 3.0e-91 339.0 216 80.1
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 3.9e-91 338.6 212 81.1
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 6.7e-91 337.8 215 78.6
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.1e-90 337.0 236 78.0
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 3.3e-90 335.5 218 78.9
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.3e-90 335.5 218 78.9
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.3e-90 335.5 218 78.9
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.3e-90 335.5 218 78.9
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.3e-90 335.1 218 78.9
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.3e-90 335.1 218 78.9
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 5.7e-90 334.7 206 79.6
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 9.6e-90 334.0 211 79.1
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 9.6e-90 334.0 218 78.4
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.3e-89 333.6 217 79.7
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.6e-89 333.2 218 78.4
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.8e-89 332.4 216 79.2
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 3.7e-89 332.0 217 77.4
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 4.8e-89 331.6 214 78.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.1e-88 330.5 215 78.6
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.4e-88 330.1 217 77.4
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.4e-88 329.3 211 79.1
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.4e-88 329.3 211 79.1
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.1e-88 328.9 216 76.4
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 4.1e-88 328.6 208 79.3
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.3e-88 328.2 217 76.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 5.3e-88 328.2 215 77.2
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 2.0e-87 326.2 212 75.5
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.6e-87 325.9 220 75.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.4e-87 325.5 216 75.5
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 3.4e-87 325.5 216 75.5
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 5.8e-87 324.7 214 76.6
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.6e-87 324.3 216 76.4
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 7.6e-87 324.3 217 75.1
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.0e-86 323.9 217 75.6
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.3e-86 323.6 215 74.9
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.3e-86 323.6 215 76.3
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 3.2e-85 318.9 208 77.4
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 7.1e-85 317.8 217 74.7
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 9.3e-85 317.4 211 74.4
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.2e-84 317.0 220 75.0
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.6e-84 316.6 213 73.2
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 2.7e-84 315.8 213 73.7
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.7e-84 315.8 213 75.6
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 6.1e-84 314.7 210 75.7
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 1.0e-83 313.9 212 74.1
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.8e-83 313.2 205 76.6
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.3e-83 312.8 212 74.1
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 3.9e-83 312.0 219 72.6
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 3.9e-83 312.0 212 74.1
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 8.7e-83 310.8 214 72.4
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.9e-82 309.7 213 74.6
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.5e-82 309.3 219 72.6
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.8e-81 305.8 216 71.3
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 4.8e-81 305.1 216 72.7
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.3e-81 304.7 210 72.4
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 8.2e-81 304.3 217 71.9
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.4e-80 303.5 213 71.4
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.4e-80 302.8 216 71.8
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.4e-80 302.8 214 71.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 9.0e-80 300.8 211 70.1
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 2.0e-79 299.7 219 68.9
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.7e-78 296.6 204 74.0
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 1.9e-77 293.1 203 71.4
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.5e-77 292.7 219 67.6
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 9.4e-77 290.8 204 71.1
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.6e-76 290.0 211 68.2
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.0e-75 287.3 209 69.9
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.9e-75 285.4 192 71.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 3.9e-75 285.4 205 72.2
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 5.1e-75 285.0 205 70.2
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.5e-74 283.5 205 71.7
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 5.7e-74 281.6 207 69.6
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.7e-73 280.0 207 69.6
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 3.7e-73 278.9 224 65.6
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.4e-72 276.2 209 67.9
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 5.3e-72 275.0 209 67.5
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 6.9e-72 274.6 208 68.3
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.5e-71 273.5 208 68.8
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 2.6e-71 272.7 211 67.8
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 3.4e-71 272.3 211 67.3
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 3.4e-71 272.3 211 67.3
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 3.4e-71 272.3 211 67.3
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 4.5e-71 271.9 211 66.8
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 5.9e-71 271.6 203 67.5
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.9e-71 271.6 211 66.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.9e-71 271.6 211 66.8
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.9e-71 271.6 209 67.0
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 7.7e-71 271.2 211 66.8
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-70 270.8 211 65.9
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.3e-70 270.4 211 66.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.7e-70 270.0 211 65.9
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 3.8e-70 268.9 211 65.9
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 5.0e-70 268.5 207 65.7
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.5e-70 268.1 200 69.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.1e-69 267.3 219 69.4
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.5e-69 266.2 211 65.9
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 5.5e-69 265.0 212 66.0
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 2.7e-68 262.7 224 62.1
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.7e-68 262.7 197 67.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.7e-68 262.7 211 62.6
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.7e-65 253.4 202 62.4
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 4.8e-65 251.9 196 66.3
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 5.3e-64 248.4 219 64.4
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 4.5e-63 245.4 203 62.1
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.7e-60 236.1 145 80.0
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.5e-58 230.3 206 56.3
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 3.1e-56 222.6 167 68.3
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.6e-55 220.3 170 68.2
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.2e-54 216.5 168 64.9
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.2e-50 204.1 122 83.6
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.7e-49 200.3 207 56.0
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.1e-45 187.6 236 54.2
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.7e-44 183.0 123 71.5
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 8.8e-43 177.9 128 69.5
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 2.6e-42 176.4 104 81.7
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 3.7e-41 172.6 105 76.2
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.4e-40 170.6 104 80.8
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 5.8e-18 95.5 62 72.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 6.0e-15 85.5 63 66.7


User provided reference genes

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