Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 2167.1 1127 100.0
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1349.0 1161 62.0
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1337.0 1150 62.3
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1325.8 1154 61.8
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1310.4 1223 58.5
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1303.9 1146 61.0
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1290.4 1151 60.4
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1285.0 1154 59.4
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1279.6 1146 60.2
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1258.0 1155 58.6
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1249.2 1166 58.7
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1248.0 1149 58.2
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1241.9 1151 58.6
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1228.8 1149 58.3
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1228.8 1150 57.7
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1228.0 1155 58.3
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1219.5 1153 57.5
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1218.0 1150 56.5
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1205.3 1120 58.5
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1200.7 1153 55.2
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1191.8 1155 56.5
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1191.8 1155 56.4
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1179.1 1133 55.2
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1170.6 1154 53.4
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1168.3 1143 55.7
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1159.1 1142 54.1
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1152.5 1148 55.7
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1144.8 1147 53.9
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1138.3 1144 53.4
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 0.0e+00 1136.7 1065 57.7
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1134.8 1150 53.0
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1124.4 1151 52.6
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1124.4 1216 51.0
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1120.9 1149 53.6
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1117.4 1136 53.4
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1116.7 1150 53.5
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1109.0 1152 53.0
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1107.8 1137 53.5
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1107.0 1146 52.9
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1101.7 1158 51.6
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1096.3 1152 51.5
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1095.9 1101 55.1
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1089.7 1146 51.7
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1086.6 1104 52.9
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1077.8 1136 51.5
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1076.6 1101 53.3
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 7.7e-312 1073.9 1135 51.5
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.6e-307 1059.7 1151 50.1
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 3.0e-306 1055.4 1151 50.9
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 3.3e-305 1052.0 1156 49.9
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.1e-303 1047.0 1042 56.3
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 3.1e-303 1045.4 1147 51.0
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 4.0e-303 1045.0 1144 51.0
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 6.9e-303 1044.3 1144 50.1
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 7.6e-302 1040.8 1145 50.9
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.5e-300 1035.8 1152 50.3
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 7.4e-297 1024.2 1150 48.7
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 4.5e-294 1015.0 1139 49.6
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 8.8e-290 1000.7 1135 48.7
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 7.7e-286 987.6 1143 46.6
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.3e-285 986.9 1139 47.3
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 5.0e-285 984.9 1144 46.2
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 6.5e-285 984.6 1144 46.4
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 4.7e-283 978.4 1019 51.3
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 7.9e-283 977.6 1144 46.6
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 3.9e-282 975.3 1121 48.7
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 5.1e-282 974.9 1230 45.7
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 6.7e-282 974.5 1086 50.4
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 1.3e-280 970.3 1139 46.7
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 5.9e-278 961.4 1096 49.6
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.2e-277 959.5 1139 45.9
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 8.5e-277 957.6 1143 46.4
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.1e-276 957.2 953 55.0
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 3.2e-276 955.7 1140 45.9
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 3.6e-275 952.2 1135 46.6
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 4.7e-275 951.8 1140 45.8
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.4e-274 950.3 1128 47.1
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.5e-273 946.8 1144 46.0
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 3.3e-273 945.7 1144 45.6
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 3.3e-273 945.7 1148 45.8
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.2e-267 927.2 1148 45.7
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 4.0e-266 922.2 1167 44.8
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 3.4e-257 892.5 1023 48.4
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 3.4e-257 892.5 1145 45.0
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.8e-250 870.2 1146 43.7
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.2e-249 867.5 1069 47.1
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 4.3e-244 849.0 1138 44.2
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 5.6e-244 848.6 1066 45.4
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 6.1e-243 845.1 928 49.9
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 2.5e-236 823.2 1137 44.0
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.8e-235 819.7 1139 42.9
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.4e-226 790.8 1160 40.7
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.7e-221 773.9 1155 39.5
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 3.0e-205 719.9 910 44.2
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.0e-165 587.0 1055 36.2
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 4.2e-135 486.9 1181 29.9
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 5.2e-133 479.9 645 44.0
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 8.3e-131 472.6 1188 30.2
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.3e-120 438.7 437 56.5
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 4.7e-118 430.3 686 39.4
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 2.7e-113 414.5 510 46.1
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.3e-109 401.4 524 42.2
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 1.2e-108 399.1 1122 29.5
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 9.9e-108 396.0 438 50.5
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.9e-106 391.7 444 49.1
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.6e-103 380.2 333 55.9
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 6.4e-91 340.1 426 46.5
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.2e-83 315.1 236 66.9
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.4e-74 285.8 232 61.2
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 7.6e-68 263.5 1287 24.2
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.7e-65 255.0 209 64.1
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.7e-63 247.3 316 44.6
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 2.4e-61 241.9 317 49.2
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.1e-57 228.8 154 64.9
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 4.5e-52 211.1 179 58.1
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.0e-51 209.9 255 50.2
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.2e-46 190.3 251 44.6
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 7.7e-44 183.7 184 54.9
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.6e-39 168.7 159 53.5
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.7e-36 158.7 119 67.2
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 4.7e-33 147.9 134 59.0
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 1.0e-32 146.7 173 45.7
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.6e-28 132.9 97 72.2
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.6e-28 132.9 97 72.2
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 5.9e-28 131.0 96 71.9
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 7.7e-28 130.6 180 45.0
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 2.2e-27 129.0 123 54.5
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 9.4e-26 123.6 150 44.7
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 9.4e-26 123.6 150 44.7
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 9.4e-26 123.6 178 39.9
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.6e-25 122.9 121 53.7
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.1e-25 122.5 116 51.7
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.5e-23 114.0 132 46.2
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 3.1e-21 108.6 93 63.4
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 9.2e-21 107.1 262 32.1
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 2.7e-20 105.5 1265 20.8
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 5.0e-19 101.3 128 45.3
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 7.3e-18 97.4 72 65.3
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 1.0e-16 93.6 60 60.0
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.4e-16 93.2 171 35.1
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 2.3e-16 92.4 55 83.6
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 3.2e-13 82.0 89 50.6
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 7.0e-13 80.9 58 69.0
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 7.0e-13 80.9 73 58.9
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 7.0e-13 80.9 103 39.8
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.3e-11 75.9 68 58.8
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.0e-11 75.5 68 57.4
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.1e-10 73.6 72 44.4
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 9.5e-10 70.5 169 32.0


User provided reference genes

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