Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 0.0e+00 1244.6 694 100.0
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 2.3e-248 862.4 706 72.4
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.5e-244 849.7 708 71.5
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.4e-237 825.9 707 70.6
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 1.0e-235 820.5 755 66.8
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 6.5e-235 817.8 713 69.1
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.9e-234 816.2 716 69.4
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 3.0e-232 808.9 724 69.1
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 7.4e-231 804.3 698 70.1
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.1e-229 800.4 713 69.3
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 6.9e-229 797.7 716 68.4
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 6.5e-227 791.2 711 69.1
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 4.2e-226 788.5 709 68.5
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 2.7e-225 785.8 706 67.3
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 3.6e-225 785.4 713 67.7
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.6e-225 785.0 714 66.8
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.1e-223 780.4 710 67.0
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 7.4e-223 777.7 709 67.3
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.7e-223 777.3 718 67.4
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.2e-222 776.2 704 66.6
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.3e-222 774.6 698 68.3
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 6.3e-222 774.6 702 68.8
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 9.1e-221 770.8 735 63.9
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.2e-220 770.4 712 65.3
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.7e-219 766.5 712 65.3
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 2.9e-219 765.8 710 68.5
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 1.1e-218 763.8 707 65.8
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.6e-217 760.0 727 66.0
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.6e-215 752.7 714 65.0
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-213 746.9 718 65.6
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.1e-213 745.7 702 67.0
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 9.1e-213 744.2 708 65.5
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 4.2e-210 735.3 578 75.1
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.0e-207 726.5 716 64.2
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 2.6e-207 726.1 715 63.5
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 4.4e-207 725.3 714 63.4
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.4e-207 725.3 711 65.5
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 1.8e-205 719.9 710 64.6
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.1e-205 718.8 614 71.7
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.2e-204 717.2 651 67.9
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.5e-202 709.5 720 61.8
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 5.5e-202 708.4 684 63.6
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 9.4e-202 707.6 718 61.8
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 8.0e-201 704.5 706 62.5
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 2.3e-200 703.0 708 61.9
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 4.0e-200 702.2 711 60.9
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.5e-199 700.3 726 62.0
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 3.4e-199 699.1 704 62.4
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 4.4e-199 698.7 723 60.9
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 7.5e-199 698.0 723 61.0
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.8e-197 693.3 710 61.8
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 4.5e-196 688.7 713 63.1
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 5.9e-196 688.3 712 61.7
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.5e-194 683.7 715 61.1
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 5.5e-194 681.8 718 60.9
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 3.6e-193 679.1 705 61.7
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.0e-192 677.6 722 59.7
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 8.8e-192 674.5 711 60.3
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 3.4e-191 672.5 712 59.8
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 5.7e-191 671.8 722 59.3
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 4.9e-190 668.7 722 58.9
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 4.9e-190 668.7 731 59.8
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.8e-189 666.8 727 60.8
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.4e-189 666.4 727 60.7
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 3.1e-189 666.0 721 58.7
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.6e-188 663.7 712 59.7
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 1.6e-188 663.7 727 60.4
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.5e-188 662.1 740 59.7
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 4.5e-188 662.1 768 57.3
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 5.9e-188 661.8 706 59.2
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 7.8e-188 661.4 705 60.3
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.1e-186 657.5 726 59.4
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.6e-185 653.7 728 57.7
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.6e-185 653.7 737 59.4
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.8e-185 652.9 746 56.7
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 2.3e-184 649.8 633 65.1
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 4.0e-184 649.0 710 58.9
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.3e-182 644.0 713 58.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.7e-182 643.7 703 59.2
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 2.7e-180 636.3 716 58.4
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 7.8e-180 634.8 727 56.7
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 3.9e-179 632.5 717 58.4
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.2e-177 627.5 735 56.5
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 3.1e-176 622.9 739 57.0
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.2e-174 616.7 477 72.3
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 6.4e-174 615.1 711 57.4
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 3.2e-173 612.8 722 56.2
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 4.1e-173 612.5 719 56.2
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.2e-172 610.9 737 57.0
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.2e-172 610.9 719 54.9
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.3e-171 606.7 796 53.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 4.3e-170 602.4 720 56.5
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 5.6e-170 602.1 762 54.5
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 2.8e-169 599.7 713 55.0
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 4.0e-168 595.9 712 54.8
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.4e-165 587.4 699 54.8
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 1.2e-164 584.3 706 53.1
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 3.3e-162 576.2 723 53.5
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.7e-161 572.4 746 52.7
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.9e-158 563.1 380 81.6
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.1e-157 561.2 685 54.7
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 4.6e-156 555.8 761 52.7
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.5e-154 550.1 711 52.6
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 5.6e-154 548.9 738 50.8
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 1.1e-146 524.6 713 51.6
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 2.4e-144 516.9 613 56.1
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 5.8e-135 485.7 449 66.1
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 2.2e-134 483.8 526 57.8
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.7e-132 476.9 665 50.5
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.9e-109 401.0 496 56.7
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.6e-108 397.9 496 56.5
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 9.4e-101 372.1 709 41.9
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.0e-94 349.7 229 83.8
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 2.1e-92 344.4 236 83.1
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.5e-87 327.0 432 52.3
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.0e-83 313.5 213 80.3
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.0e-83 313.5 213 80.3
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 6.8e-83 312.8 432 51.2
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.4e-80 304.3 231 74.5
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.7e-79 300.8 231 73.2
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 3.8e-78 297.0 186 86.6
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.7e-71 274.2 518 41.3
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 9.8e-66 255.8 446 44.4
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 6.4e-65 253.1 172 82.0
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 8.6e-62 242.7 384 47.1
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 3.6e-60 237.3 597 34.7
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 1.1e-53 215.7 136 84.6
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 7.8e-47 193.0 411 43.6
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 8.1e-44 183.0 523 33.5
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.0e-42 178.3 315 44.8
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.9e-37 161.8 208 54.8
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 3.5e-31 141.0 86 89.5
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 4.6e-31 140.6 243 41.6
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 3.0e-30 137.9 94 78.7
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 2.8e-28 131.3 220 47.7
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.6e-26 124.8 212 43.4
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.3e-24 116.3 70 88.6
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.3e-24 116.3 70 88.6
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.3e-24 116.3 70 88.6
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.9e-23 113.2 72 83.3
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 2.5e-21 108.2 296 34.1
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.3e-21 107.8 70 87.1
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 9.3e-16 89.7 444 26.6
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.9e-14 84.3 65 69.2
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.1e-11 74.7 70 61.4
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.0e-10 72.0 293 32.1
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 6.5e-09 67.0 355 23.9
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.1e-08 66.2 472 27.5
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 4.2e-08 64.3 355 23.4
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 5.5e-08 63.9 336 25.9
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 1.6e-07 62.4 141 39.0
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 2.7e-07 61.6 355 24.2
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.5e-07 61.2 49 77.6
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 6.0e-07 60.5 363 24.5
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 7.9e-07 60.1 334 25.1
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 1.0e-06 59.7 336 25.6
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 1.8e-06 58.9 351 25.9
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 2.3e-06 58.5 342 24.3
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.0e-06 58.2 342 24.3
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 3.9e-06 57.8 64 57.8
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 3.9e-06 57.8 345 25.2
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 5.1e-06 57.4 305 23.9
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 6.7e-06 57.0 340 25.6
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 8.7e-06 56.6 357 24.6


User provided reference genes

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