Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 1.5e-115 419.5 206 100.0
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.0e-63 247.3 199 65.8
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 3.0e-63 245.7 173 71.7
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 2.2e-61 239.6 181 69.1
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 2.8e-61 239.2 203 62.1
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 3.7e-61 238.8 206 64.1
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 1.4e-60 236.9 199 59.8
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.4e-60 236.9 203 62.1
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 3.1e-60 235.7 186 65.1
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 4.1e-60 235.3 196 63.3
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 6.9e-60 234.6 198 65.2
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 3.4e-59 232.3 181 65.7
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 3.4e-59 232.3 180 65.0
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 7.7e-59 231.1 199 63.3
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 1.0e-58 230.7 201 60.7
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.0e-58 230.7 197 62.4
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.0e-58 228.4 184 64.7
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 8.5e-58 227.6 211 56.4
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.1e-57 227.3 186 63.4
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 1.1e-57 227.3 186 63.4
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 3.2e-57 225.7 199 62.3
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 3.2e-57 225.7 203 59.6
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 3.2e-57 225.7 159 70.4
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 4.2e-57 225.3 206 60.7
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.2e-56 223.8 203 61.1
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 2.1e-56 223.0 180 64.4
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.7e-56 222.6 184 61.4
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 3.6e-56 222.2 199 58.8
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 3.6e-56 222.2 181 63.5
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 4.7e-56 221.9 159 69.2
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 6.1e-56 221.5 203 56.2
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.0e-55 220.7 181 63.0
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 2.3e-55 219.5 206 60.2
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 2.3e-55 219.5 176 63.6
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 2.3e-55 219.5 189 59.3
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 3.0e-55 219.2 161 68.3
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 3.9e-55 218.8 163 68.7
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 6.7e-55 218.0 175 63.4
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 6.7e-55 218.0 206 58.3
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.5e-54 216.9 175 62.9
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 3.3e-54 215.7 192 60.4
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 3.3e-54 215.7 203 58.6
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 4.4e-54 215.3 200 57.0
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 4.4e-54 215.3 202 59.9
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 5.7e-54 214.9 162 67.9
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 2.2e-53 213.0 191 61.3
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 2.8e-53 212.6 156 68.6
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 2.8e-53 212.6 285 45.3
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 6.3e-53 211.5 176 63.1
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 8.2e-53 211.1 169 66.3
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 1.4e-52 210.3 189 57.7
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.4e-52 210.3 176 61.4
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.4e-52 209.5 154 70.1
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 4.1e-52 208.8 176 60.8
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 5.3e-52 208.4 176 60.8
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.2e-51 207.2 176 61.9
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 4.5e-51 205.3 162 63.6
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 4.5e-51 205.3 164 65.9
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 4.5e-51 205.3 173 64.7
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 5.9e-51 204.9 197 56.9
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.7e-50 203.4 209 53.6
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.7e-50 203.4 177 61.0
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.2e-50 203.0 200 57.5
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 5.0e-50 201.8 206 54.9
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 8.5e-50 201.1 181 59.7
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.5e-49 200.3 208 55.3
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.9e-49 199.9 187 58.3
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.9e-49 199.9 196 56.1
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.9e-49 199.9 196 56.1
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.9e-49 199.9 196 56.1
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 7.2e-49 198.0 167 61.1
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.6e-48 196.8 161 61.5
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 3.6e-48 195.7 162 60.5
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 4.7e-48 195.3 151 63.6
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 6.1e-48 194.9 186 56.5
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.8e-47 193.4 183 56.8
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.8e-47 193.4 180 55.0
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.8e-47 193.4 143 69.9
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 2.3e-47 193.0 183 56.3
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 4.0e-47 192.2 167 57.5
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 5.2e-47 191.8 184 56.5
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 5.2e-47 191.8 166 59.6
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 8.8e-47 191.0 165 57.6
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 7.5e-46 188.0 165 59.4
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 9.7e-46 187.6 150 62.7
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.3e-45 187.2 165 58.2
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 4.8e-45 185.3 152 64.5
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 1.8e-44 183.3 162 56.8
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 1.8e-44 183.3 183 54.1
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.4e-44 183.0 167 57.5
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 7.0e-44 181.4 145 62.1
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.6e-43 180.3 155 57.4
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.7e-43 179.5 178 56.7
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.3e-42 177.2 199 51.8
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 1.3e-42 177.2 153 56.9
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 9.4e-41 171.0 164 56.7
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.2e-40 170.6 161 53.4
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.2e-40 170.6 195 51.3
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.6e-38 162.9 154 57.1
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 2.8e-37 159.5 198 49.5
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 8.3e-37 157.9 199 49.2
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-36 156.8 146 58.2
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 4.1e-36 155.6 130 63.8
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 3.5e-35 152.5 118 67.8
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.0e-34 151.0 119 62.2
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.7e-34 150.2 120 62.5
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.7e-34 150.2 185 45.9
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 2.9e-34 149.4 120 62.5
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 4.7e-32 142.1 130 59.2
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 8.0e-32 141.4 144 56.9
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 3.0e-31 139.4 174 47.7
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 4.0e-31 139.0 165 50.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 5.2e-31 138.7 123 60.2
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 2.4e-28 129.8 162 42.0
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 5.4e-28 128.6 162 48.8
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 5.4e-28 128.6 162 48.8
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.2e-27 127.5 108 63.0
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 3.8e-26 122.5 110 61.8
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 3.3e-25 119.4 150 48.7
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 4.3e-25 119.0 97 61.9
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.2e-24 117.5 113 56.6
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 3.6e-24 115.9 91 60.4
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 6.8e-23 111.7 173 40.5
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.2e-22 110.9 118 52.5
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 7.5e-22 108.2 91 59.3
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.4e-14 82.8 117 43.6
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 2.4e-12 76.6 44 79.5
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 4.6e-11 72.4 126 42.1
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 5.0e-10 68.9 73 52.1
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.3e-09 66.2 44 65.9
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.8e-08 63.2 64 50.0
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.8e-07 60.5 96 44.8
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 6.8e-07 58.5 46 56.5


User provided reference genes

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