Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 9.5e-65 250.0 123 100.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.1e-27 125.9 122 53.3
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 3.5e-27 125.2 117 61.5
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 4.6e-27 124.8 117 61.5
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 6.0e-27 124.4 126 59.5
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 3.9e-26 121.7 123 56.1
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.5e-25 119.8 123 55.3
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 3.3e-25 118.6 123 53.7
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.3e-25 118.2 123 51.2
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 4.3e-25 118.2 123 55.3
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 5.7e-25 117.9 123 54.5
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.4e-25 117.5 117 55.6
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 7.4e-25 117.5 123 56.1
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.3e-24 116.7 117 56.4
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.3e-24 116.7 119 54.6
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.6e-24 116.3 116 55.2
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.6e-24 116.3 112 58.0
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.8e-24 115.5 119 55.5
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 6.3e-24 114.4 123 52.0
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 6.3e-24 114.4 120 48.3
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 3.1e-23 112.1 116 54.3
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.5e-22 109.8 120 53.3
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.0e-22 109.4 119 47.1
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.5e-22 108.2 130 45.4
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.5e-22 108.2 123 50.4
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 7.6e-22 107.5 123 50.4
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 2.2e-21 105.9 119 46.2
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 2.9e-21 105.5 121 52.1
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.9e-21 105.5 123 50.4
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.9e-21 105.5 123 48.8
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 3.8e-21 105.1 130 50.0
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.8e-21 105.1 123 50.4
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 5.0e-21 104.8 121 44.6
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 5.0e-21 104.8 121 44.6
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.0e-21 104.8 123 49.6
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.0e-21 104.8 123 49.6
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 6.5e-21 104.4 119 50.4
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 8.5e-21 104.0 120 46.7
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 1.1e-20 103.6 120 51.7
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.4e-20 103.2 119 45.4
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.4e-20 103.2 120 50.8
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.9e-20 102.8 123 47.2
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 3.2e-20 102.1 124 47.6
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 4.2e-20 101.7 124 48.4
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 7.2e-20 100.9 116 47.4
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 9.3e-20 100.5 124 46.8
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.7e-19 99.0 124 46.0
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 4.6e-19 98.2 121 46.3
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 6.1e-19 97.8 115 48.7
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 6.1e-19 97.8 124 46.8
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.4e-18 96.7 123 44.7
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.8e-18 96.3 123 46.3
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 2.3e-18 95.9 115 48.7
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 3.0e-18 95.5 125 47.2
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 3.9e-18 95.1 116 48.3
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 3.9e-18 95.1 123 43.1
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 6.7e-18 94.4 117 45.3
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.1e-17 93.6 121 39.7
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.1e-17 93.6 121 43.0
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 2.5e-17 92.4 121 43.0
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 9.7e-17 90.5 131 42.0
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 9.7e-17 90.5 121 42.1
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 2.2e-16 89.4 118 46.6
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 3.7e-16 88.6 115 47.8
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 3.7e-16 88.6 123 42.3
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 6.3e-16 87.8 123 41.5
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.8e-15 86.3 129 41.9
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.8e-15 86.3 121 39.7
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.1e-15 85.5 99 47.5
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 4.1e-15 85.1 132 39.4
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 4.1e-15 85.1 116 47.4
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 9.1e-15 84.0 118 42.4
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.2e-14 83.6 122 40.2
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.0e-14 82.8 134 39.6
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 4.5e-14 81.6 111 45.0
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 5.9e-14 81.3 121 38.8
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 5.9e-14 81.3 121 38.8
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.9e-12 76.3 123 39.0
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.5e-12 75.9 113 38.9
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.2e-12 75.1 116 42.2
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.2e-12 75.1 116 42.2
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 5.5e-12 74.7 125 39.2
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 9.4e-12 73.9 118 39.0
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.6e-11 73.2 119 42.9
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.6e-11 73.2 118 39.0
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.1e-11 72.8 120 37.5
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 3.6e-11 72.0 120 39.2
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 3.6e-11 72.0 123 34.1
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 7.9e-11 70.9 120 40.0
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.0e-10 70.5 123 35.0
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.4e-10 70.1 120 38.3
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.0e-10 68.9 125 37.6
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.0e-10 68.9 119 37.8
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 3.0e-10 68.9 119 40.3
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 3.9e-10 68.6 120 37.5
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 3.9e-10 68.6 116 36.2
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 5.1e-10 68.2 124 36.3
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 6.7e-10 67.8 111 38.7
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 6.7e-10 67.8 122 34.4
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 8.8e-10 67.4 115 36.5
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 8.8e-10 67.4 123 35.0
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-09 67.0 118 33.1
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.5e-09 66.6 118 38.1
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 1.5e-09 66.6 122 34.4
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.0e-09 66.2 119 36.1
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 4.4e-09 65.1 121 37.2
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 5.7e-09 64.7 75 52.0
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 7.4e-09 64.3 119 35.3
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 7.4e-09 64.3 120 38.3
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.8e-08 62.4 118 33.9
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 2.8e-08 62.4 126 33.3
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.7e-08 62.0 118 33.9
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.7e-08 62.0 116 36.2
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 3.7e-08 62.0 113 38.1
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 6.3e-08 61.2 119 34.5
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 8.2e-08 60.8 119 37.0
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 8.2e-08 60.8 118 32.2
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 1.1e-07 60.5 122 35.2
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.4e-07 60.1 118 37.3
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.4e-07 60.1 118 37.3
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.4e-07 60.1 118 37.3
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 1.8e-07 59.7 77 44.2
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.8e-07 59.7 114 38.6
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.8e-07 59.7 114 38.6
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 3.1e-07 58.9 118 31.4
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 3.1e-07 58.9 123 37.4
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 5.3e-07 58.2 118 35.6
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 5.3e-07 58.2 114 35.1
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 5.3e-07 58.2 116 37.1
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 5.3e-07 58.2 114 30.7
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.1e-07 57.4 125 31.2
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 9.1e-07 57.4 125 31.2
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 1.5e-06 56.6 118 31.4
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.0e-06 56.2 111 34.2
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 3.4e-06 55.5 94 35.1
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 3.4e-06 55.5 137 32.8


User provided reference genes

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