Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 4.4e-82 307.8 141 100.0
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 8.6e-70 266.9 134 86.6
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.9e-69 265.8 134 85.8
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.3e-69 265.0 134 85.8
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.6e-68 261.5 134 83.6
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.1e-67 258.5 134 82.8
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 3.1e-67 258.5 134 82.1
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 5.2e-67 257.7 134 81.3
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 8.9e-67 256.9 133 82.0
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 2.0e-66 255.8 133 82.0
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.3e-65 253.1 146 76.7
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 1.7e-65 252.7 134 81.3
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.2e-65 252.3 147 74.8
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 3.8e-65 251.5 134 79.9
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 4.9e-65 251.1 146 76.0
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 6.4e-65 250.8 134 79.9
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 2.4e-64 248.8 134 80.6
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 5.4e-64 247.7 134 79.1
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 7.1e-64 247.3 134 79.1
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 7.1e-64 247.3 135 81.5
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.6e-63 246.1 134 79.9
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.6e-63 246.1 151 71.5
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.7e-63 245.4 134 78.4
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 6.0e-63 244.2 154 70.1
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.3e-62 243.0 157 70.1
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.3e-62 242.3 134 76.9
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 3.0e-62 241.9 134 76.9
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.9e-62 241.5 149 71.8
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 5.1e-62 241.1 134 78.4
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 8.7e-62 240.4 122 86.1
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 8.7e-62 240.4 134 76.1
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 8.7e-62 240.4 144 73.6
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.1e-61 240.0 152 71.7
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.9e-61 239.2 134 76.9
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 5.6e-61 237.7 144 70.8
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 7.3e-61 237.3 134 75.4
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 7.3e-61 237.3 149 69.1
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 9.6e-61 236.9 130 79.2
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.6e-60 236.1 134 74.6
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 2.8e-60 235.3 136 77.9
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 2.8e-60 235.3 152 67.1
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 4.8e-60 234.6 137 74.5
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 6.2e-60 234.2 149 68.5
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 8.1e-60 233.8 140 72.9
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 8.1e-60 233.8 132 78.8
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 1.1e-59 233.4 133 77.4
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 1.8e-59 232.6 136 71.3
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 2.4e-59 232.3 133 76.7
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 2.4e-59 232.3 145 68.3
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 3.1e-59 231.9 134 73.9
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.3e-59 231.1 136 74.3
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.3e-59 231.1 136 74.3
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.3e-59 231.1 136 74.3
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 9.0e-59 230.3 134 73.1
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 9.0e-59 230.3 134 73.1
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 1.2e-58 229.9 148 68.2
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 1.5e-58 229.6 134 73.1
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 2.0e-58 229.2 158 63.9
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 2.0e-58 229.2 147 67.3
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 2.6e-58 228.8 134 73.1
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 2.6e-58 228.8 134 73.1
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 4.5e-58 228.0 135 74.1
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 4.5e-58 228.0 135 74.1
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 5.8e-58 227.6 134 72.4
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 5.8e-58 227.6 134 72.4
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 5.8e-58 227.6 152 65.1
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 5.8e-58 227.6 152 65.1
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 7.6e-58 227.3 135 73.3
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 7.6e-58 227.3 122 75.4
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 7.6e-58 227.3 143 69.9
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 9.9e-58 226.9 147 67.3
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 1.3e-57 226.5 122 79.5
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 1.7e-57 226.1 134 72.4
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 2.2e-57 225.7 153 64.7
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 2.2e-57 225.7 153 64.7
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 2.2e-57 225.7 134 72.4
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.9e-57 225.3 145 67.6
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 3.8e-57 224.9 134 71.6
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 6.4e-57 224.2 134 71.6
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 8.4e-57 223.8 134 71.6
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 1.4e-56 223.0 122 78.7
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 1.4e-56 223.0 157 63.7
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 2.4e-56 222.2 175 58.9
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 9.3e-56 220.3 132 75.0
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 9.3e-56 220.3 116 80.2
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.6e-55 219.5 132 75.0
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.1e-55 219.2 143 63.6
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 2.7e-55 218.8 129 71.3
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.5e-55 218.4 134 73.1
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.6e-55 218.0 144 66.7
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 4.6e-55 218.0 147 63.9
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 7.9e-55 217.2 143 63.6
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.8e-54 216.1 129 71.3
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 3.9e-54 214.9 129 73.6
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.1e-53 213.4 128 71.9
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.5e-53 213.0 150 62.0
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 5.6e-53 211.1 141 67.4
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 7.4e-53 210.7 126 71.4
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.6e-52 209.5 139 68.3
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 2.1e-52 209.1 120 72.5
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 3.6e-52 208.4 124 72.6
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.1e-51 206.8 120 71.7
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.1e-51 206.8 130 72.3
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 4.0e-51 204.9 150 60.0
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 2.9e-49 198.7 158 60.1
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 4.6e-47 191.4 142 57.7
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 6.7e-46 187.6 123 67.5
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.9e-45 186.0 113 70.8
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.9e-45 186.0 113 70.8
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.1e-43 180.3 158 55.1
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 9.0e-43 177.2 105 72.4
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 2.3e-38 162.5 172 45.3
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.1e-37 160.2 117 58.1
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 5.7e-37 157.9 123 52.8
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.3e-36 156.8 135 52.6
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 4.1e-35 151.8 87 74.7
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 2.6e-34 149.1 135 47.4
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.0e-30 137.1 144 45.8
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 1.8e-27 126.3 71 71.8
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 3.8e-25 118.6 58 84.5
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.6e-23 113.2 57 78.9
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.0e-18 96.3 114 47.4
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 5.9e-18 94.7 74 58.1
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.0e-17 94.0 81 55.6
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.9e-17 92.4 54 68.5
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 1.4e-16 90.1 80 53.8
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.2e-16 89.0 80 55.0
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.6e-15 86.7 105 45.7
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 7.9e-15 84.3 112 40.2
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.0e-13 79.7 75 54.7
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 3.3e-13 79.0 134 35.1
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 8.2e-12 74.3 54 53.7
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.4e-11 73.6 40 72.5
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 5.3e-11 71.6 111 36.0
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 9.1e-11 70.9 52 51.9
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 7.7e-10 67.8 52 50.0
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 7.7e-10 67.8 51 51.0
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 7.7e-10 67.8 51 51.0
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 3.8e-09 65.5 102 35.3
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 3.8e-09 65.5 54 55.6
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 3.0e-06 55.8 49 51.0


User provided reference genes

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