Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 0.0e+00 1304.3 640 100.0
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 5.9e-299 1030.4 647 77.9
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 9.1e-292 1006.5 652 78.1
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 1.5e-291 1005.7 648 76.1
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 5.0e-290 1000.7 653 77.2
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 4.2e-289 997.7 655 76.2
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.6e-288 995.7 655 76.0
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.7e-288 994.2 648 76.1
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 2.6e-286 988.4 650 76.3
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 7.4e-286 986.9 660 75.3
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 9.7e-286 986.5 648 75.9
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 6.3e-285 983.8 648 75.6
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.1e-284 983.0 651 75.3
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-284 983.0 651 75.3
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.1e-284 981.5 651 75.1
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 9.1e-284 979.9 653 75.7
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.5e-283 978.0 651 75.0
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 5.9e-283 977.2 652 75.3
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.0e-282 974.2 650 74.2
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.5e-282 973.8 651 74.5
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-281 971.8 650 74.5
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 3.2e-281 971.5 656 74.5
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 7.2e-281 970.3 658 73.1
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 3.6e-280 968.0 652 74.5
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.6e-278 961.8 656 73.0
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 5.7e-278 960.7 662 73.0
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.8e-277 958.4 647 72.2
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.8e-277 957.6 641 73.0
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 2.4e-276 955.3 658 72.6
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 3.1e-276 954.9 647 72.0
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.1e-276 954.9 641 72.9
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.7e-274 949.1 640 72.0
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.7e-274 949.1 647 71.4
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 5.0e-274 947.6 650 73.5
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 1.4e-271 939.5 650 72.5
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.1e-268 929.9 645 71.3
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.4e-268 928.7 660 70.2
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.6e-267 926.0 559 79.1
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.7e-266 922.5 650 72.2
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 2.9e-266 921.8 642 72.0
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 3.8e-266 921.4 657 70.6
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.1e-265 919.8 652 71.6
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.5e-265 918.7 656 70.6
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.7e-264 914.4 648 71.8
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 8.0e-264 913.7 658 71.1
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 3.4e-262 908.3 657 70.2
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 4.4e-262 907.9 653 70.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.7e-261 904.8 576 75.0
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 4.8e-261 904.4 631 72.7
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.4e-260 902.1 663 68.2
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.4e-260 902.1 663 68.2
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 5.4e-260 901.0 654 68.8
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.0e-258 896.7 551 78.0
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.6e-256 888.3 650 69.8
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.7e-256 887.9 668 67.5
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 6.1e-256 887.5 653 69.5
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 8.0e-256 887.1 554 77.4
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.0e-256 887.1 668 67.5
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.0e-255 886.7 665 67.2
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 2.3e-255 885.6 557 75.0
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 2.3e-255 885.6 535 79.3
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 8.9e-255 883.6 653 68.8
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.5e-254 882.9 610 70.0
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 3.4e-254 881.7 629 70.6
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.7e-253 879.4 658 69.3
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.4e-252 876.3 605 71.1
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.8e-252 875.9 526 78.3
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 5.9e-251 870.9 684 64.2
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.0e-247 860.1 655 67.9
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 2.2e-245 852.4 662 65.4
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 6.4e-245 850.9 659 65.3
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.4e-244 849.7 683 63.7
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 2.7e-243 845.5 613 69.2
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 3.5e-243 845.1 649 66.9
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.3e-242 842.4 647 66.6
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 5.0e-242 841.3 656 66.5
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 5.0e-242 841.3 656 66.5
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-241 839.7 654 67.0
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.9e-241 839.3 656 66.3
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.2e-240 836.6 683 63.3
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 6.2e-240 834.3 664 65.8
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.1e-239 833.6 592 69.3
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 1.1e-239 833.6 567 73.0
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 4.0e-239 831.6 552 71.2
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 4.4e-238 828.2 592 71.1
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 4.4e-238 828.2 561 73.3
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 7.5e-238 827.4 573 70.3
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 9.8e-238 827.0 658 63.7
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 2.9e-237 825.5 635 64.7
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 3.0e-234 815.5 607 67.2
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 3.0e-234 815.5 667 63.7
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 6.6e-234 814.3 548 71.2
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 8.6e-234 813.9 548 71.4
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.5e-233 812.4 552 69.9
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.2e-232 810.1 661 64.0
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 4.0e-231 805.1 653 64.9
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 6.8e-231 804.3 664 62.7
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.5e-230 803.1 653 64.8
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.5e-230 803.1 653 64.8
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.0e-230 802.7 660 61.7
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 4.9e-229 798.1 646 63.2
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.2e-227 793.5 640 65.2
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.7e-227 792.3 528 71.8
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 2.3e-226 789.3 550 69.1
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.5e-225 786.6 544 68.8
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.9e-225 786.2 652 63.5
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.2e-221 772.7 613 62.2
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 7.1e-220 767.7 623 64.2
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 4.6e-219 765.0 652 62.9
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.0e-218 762.3 653 59.1
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.4e-215 753.4 527 70.2
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.8e-215 753.1 553 67.3
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 4.2e-212 741.9 650 62.2
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 4.3e-209 731.9 625 60.8
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 4.8e-208 728.4 661 58.2
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 2.9e-205 719.2 650 61.5
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 8.1e-200 701.0 657 57.1
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 6.0e-195 684.9 569 61.3
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 3.0e-194 682.6 687 56.2
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.5e-182 643.7 653 54.7
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 2.7e-179 632.9 662 52.4
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 5.3e-175 618.6 665 53.5
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.0e-173 614.4 426 69.0
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 8.5e-173 611.3 519 62.0
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 9.1e-167 591.3 504 66.1
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.3e-154 550.1 549 54.3
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 7.5e-153 545.0 560 51.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 1.4e-151 540.8 417 67.6
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 3.2e-148 529.6 335 73.1
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.3e-125 453.8 381 57.5
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 3.9e-125 453.0 383 57.4
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 8.6e-125 451.8 285 73.7
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 4.2e-95 353.2 351 55.0
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.2e-86 325.1 643 35.5
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.5e-84 318.2 644 33.7
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.5e-73 281.6 432 42.8
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 3.7e-59 233.8 216 54.2
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.9e-47 194.9 164 56.7
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 1.7e-40 171.8 152 55.9
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.3e-32 145.6 308 31.5
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.0e-28 131.7 93 66.7
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-27 128.6 76 77.6
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 5.0e-24 117.1 101 59.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 3.6e-22 110.9 204 41.7
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 5.7e-20 103.6 159 35.2
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 2.7e-17 94.7 136 47.8
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 7.5e-12 76.6 146 39.7
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.9e-10 72.0 38 76.3
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.0e-08 66.2 58 60.3


User provided reference genes

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