Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2245 Cannabis sativa HOM05D001128 ORTHO05D000721 9.1e-94 347.1 196 100.0
CANSAT56G3374 Cannabis sativa HOM05D001128 ORTHO05D000721 3.1e-86 322.0 183 100.0
Haze_17155 Corylus avellana HOM05D001128 ORTHO05D000721 2.0e-32 143.3 190 46.3
Cfa001394 Carpinus fangiana HOM05D001128 ORTHO05D000721 3.4e-32 142.5 190 46.3
Cpa.g.sc19.247 Carica papaya HOM05D001128 ORTHO05D000721 9.9e-32 141.0 191 47.6
Prupe.2G243200 Prunus persica HOM05D001128 ORTHO05D000721 2.3e-28 129.8 186 47.3
CiPaw.02G188400 Carya illinoinensis HOM05D001128 ORTHO05D000721 3.9e-28 129.0 190 41.6
Potri.010G195800 Populus trichocarpa HOM05D001128 ORTHO05D000721 7.4e-27 124.8 187 45.5
Manes.10G020800 Manihot esculenta HOM05D001128 ORTHO05D000721 1.6e-26 123.6 190 56.3
Dinv16282 Davidia involucrata HOM05D001128 ORTHO05D000721 5.3e-25 118.6 210 41.0
QL08p062120 Quercus lobata HOM05D001128 ORTHO05D000721 4.5e-24 115.5 195 43.6
GSVIVG01016431001 Vitis vinifera HOM05D001128 ORTHO05D000721 4.5e-24 115.5 188 42.0
Potri.008G062200 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.5e-22 109.8 189 42.3
CiPaw.01G293700 Carya illinoinensis HOM05D001128 ORTHO05D000721 5.5e-22 108.6 194 40.2
Manes.07G123000 Manihot esculenta HOM05D001128 ORTHO05D000721 3.5e-21 105.9 202 38.1
RcHm_v2.0_Chr1g0368901 Rosa chinensis HOM05D001128 ORTHO05D000721 6.7e-20 101.7 175 41.1
Sabra10G0150300 Salix brachista HOM05D001128 ORTHO05D000721 1.9e-19 100.1 183 40.4
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 5.7e-19 98.6 188 38.8
CSS0013156 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 9.7e-19 97.8 183 38.8
CSS0047983 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.6e-18 97.1 198 39.9
FAN06G3577 Fragaria x ananassa HOM05D001128 ORTHO05D000721 2.2e-18 96.7 174 41.4
FvH4_7g23630 Fragaria vesca HOM05D001128 ORTHO05D000721 3.7e-18 95.9 174 40.8
TAR636G2726 Trochodendron aralioides HOM05D001128 ORTHO05D000721 3.7e-18 95.9 178 38.8
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 4.8e-18 95.5 187 39.6
CSS0030928 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 6.3e-18 95.1 181 38.1
FAN10G3504 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.1e-17 94.4 174 40.2
FAN01G1897 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.8e-17 93.6 174 40.2
FAN06G2816 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.8e-17 93.6 174 40.2
CiPaw.09G202700 Carya illinoinensis HOM05D001128 ORTHO05D000721 2.4e-17 93.2 184 38.0
Nn2g13535 Nelumbo nucifera HOM05D001128 ORTHO05D000721 2.4e-17 93.2 181 39.8
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 2.4e-17 93.2 183 42.1
Actinidia13814 Actinidia chinensis HOM05D001128 ORTHO05D000721 3.1e-17 92.8 190 38.9
Hma1.2p1_0671F.1_g200660 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 5.3e-17 92.0 181 39.8
FAN03G2145 Fragaria x ananassa HOM05D001128 ORTHO05D000721 6.9e-17 91.7 182 39.6
GSVIVG01034054001 Vitis vinifera HOM05D001128 ORTHO05D000721 1.5e-16 90.5 181 35.9
Thecc.10G030500 Theobroma cacao HOM05D001128 ORTHO05D000721 2.6e-16 89.7 192 40.6
Sabra08G0045800 Salix brachista HOM05D001128 ORTHO05D000721 4.5e-16 89.0 183 38.8
vmacro07011 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 7.7e-16 88.2 184 36.4
Lj3C959G13 Lonicera japonica HOM05D001128 ORTHO05D000721 1.0e-15 87.8 181 38.1
MBI14_g02856_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 1.0e-15 87.8 182 35.7
Lj1A945T19 Lonicera japonica HOM05D001128 ORTHO05D000721 5.0e-15 85.5 195 36.4
MD07G1207900 Malus domestica HOM05D001128 ORTHO05D000721 5.0e-15 85.5 190 38.9
Actinidia02898 Actinidia chinensis HOM05D001128 ORTHO05D000721 1.1e-14 84.3 192 37.0
Glyma.02G252700 Glycine max HOM05D001128 ORTHO05D000721 1.1e-14 84.3 186 36.6
ClCG11G006470 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.4e-14 84.0 178 35.4
Rhsim05G0200600 Rhododendron simsii HOM05D001128 ORTHO05D000721 1.4e-14 84.0 179 37.4
TWI74G1371 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 2.5e-14 83.2 186 37.6
CANSAT35G1304 Cannabis sativa HOM05D001128 ORTHO05D000721 3.2e-14 82.8 185 37.8
Duzib114G0703 Durio zibethinus HOM05D001128 ORTHO05D000721 3.2e-14 82.8 163 41.1
Actinidia29161 Actinidia chinensis HOM05D001128 ORTHO05D000721 4.2e-14 82.4 199 35.2
MELO3C026566.2 Cucumis melo HOM05D001128 ORTHO05D000721 5.5e-14 82.0 181 36.5
MELO3C008261.2 Cucumis melo HOM05D001128 ORTHO05D000721 7.2e-14 81.6 179 36.3
COL.COLO4_25581 Corchorus olitorius HOM05D001128 ORTHO05D000721 9.4e-14 81.3 197 39.6
ClCG07G003770 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.2e-13 80.9 180 36.7
CiPaw.10G150200 Carya illinoinensis HOM05D001128 ORTHO05D000721 2.1e-13 80.1 189 35.4
Thecc.05G027900 Theobroma cacao HOM05D001128 ORTHO05D000721 2.1e-13 80.1 175 40.0
Lj1g0009897 Lotus japonicus HOM05D001128 ORTHO05D000721 2.7e-13 79.7 193 35.8
Prupe.6G265300 Prunus persica HOM05D001128 ORTHO05D000721 3.6e-13 79.3 197 36.0
Gohir.D09G157200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.6e-13 79.0 190 37.4
Glyma.14G063900 Glycine max HOM05D001128 ORTHO05D000721 7.9e-13 78.2 187 35.8
MD04G1140200 Malus domestica HOM05D001128 ORTHO05D000721 7.9e-13 78.2 198 35.4
Phvul.008G113400 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 1.0e-12 77.8 187 38.5
Haze_20899 Corylus avellana HOM05D001128 ORTHO05D000721 2.3e-12 76.6 198 35.4
CsaV3_6G001520 Cucumis sativus L. HOM05D001128 ORTHO05D000721 2.3e-12 76.6 194 34.5
TWI77G0372 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 2.3e-12 76.6 181 36.5
TAR369G0849 Trochodendron aralioides HOM05D001128 ORTHO05D000721 2.3e-12 76.6 180 32.8
Ciclev10031729m.g Citrus clementina HOM05D001128 ORTHO05D000721 3.0e-12 76.3 189 34.9
Dinv34448 Davidia involucrata HOM05D001128 ORTHO05D000721 3.0e-12 76.3 183 35.0
Duzib128G2050 Durio zibethinus HOM05D001128 ORTHO05D000721 3.0e-12 76.3 134 43.3
Cfa017294 Carpinus fangiana HOM05D001128 ORTHO05D000721 3.9e-12 75.9 196 34.7
MD12G1155400 Malus domestica HOM05D001128 ORTHO05D000721 3.9e-12 75.9 197 35.0
Aqoxy1G00786 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 5.1e-12 75.5 187 36.4
LjContig00141g0001836 Lotus japonicus HOM05D001128 ORTHO05D000721 5.1e-12 75.5 191 34.6
Rhsim03G0138400 Rhododendron simsii HOM05D001128 ORTHO05D000721 5.1e-12 75.5 196 31.6
QL07p027947 Quercus lobata HOM05D001128 ORTHO05D000721 6.7e-12 75.1 201 36.3
CSS0004370 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.1e-11 74.3 180 36.7
Duzib106G0325 Durio zibethinus HOM05D001128 ORTHO05D000721 1.1e-11 74.3 187 36.4
Ca_07581_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 1.5e-11 73.9 210 34.8
VMungo1383G1773 Vigna mungo HOM05D001128 ORTHO05D000721 1.5e-11 73.9 197 36.0
Duzib106G0526 Durio zibethinus HOM05D001128 ORTHO05D000721 2.5e-11 73.2 164 39.0
Dinv37107 Davidia involucrata HOM05D001128 ORTHO05D000721 3.3e-11 72.8 157 36.9
Phvul.001G238700 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 3.3e-11 72.8 133 40.6
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 4.3e-11 72.4 191 35.6
Cpa.g.sc56.66 Carica papaya HOM05D001128 ORTHO05D000721 7.4e-11 71.6 180 37.2
Gorai.006G178800 Gossypium raimondii HOM05D001128 ORTHO05D000721 7.4e-11 71.6 190 36.8
Manes.10G020700 Manihot esculenta HOM05D001128 ORTHO05D000721 9.7e-11 71.2 183 32.2
Manes.09G099100 Manihot esculenta HOM05D001128 ORTHO05D000721 1.3e-10 70.9 190 33.7
TWI09G0818 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 2.2e-10 70.1 188 32.4
Gorai.012G109000 Gossypium raimondii HOM05D001128 ORTHO05D000721 2.8e-10 69.7 181 35.4
Gohir.D04G126000 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.8e-10 68.9 185 36.2
Lalb_Chr18g0052901 Lupinus albus HOM05D001128 ORTHO05D000721 6.3e-10 68.6 80 51.2
PSO339G4622 Papaver somniferum HOM05D001128 ORTHO05D000721 6.3e-10 68.6 192 35.4
Actinidia02379 Actinidia chinensis HOM05D001128 ORTHO05D000721 8.2e-10 68.2 184 34.8
Lsat_1_v5_gn_2_116981 Lactuca sativa HOM05D001128 ORTHO05D000721 1.4e-09 67.4 92 46.7
Eucgr.J00969 Eucalyptus grandis HOM05D001128 ORTHO05D000721 1.8e-09 67.0 77 51.9
Nitab4.5_0002822g0050 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.4e-09 66.6 209 29.2
PGR044G0160 Punica granatum HOM05D001128 ORTHO05D000721 3.1e-09 66.2 85 50.6
Glyma.18G191000 Glycine max HOM05D001128 ORTHO05D000721 4.1e-09 65.9 211 35.5
FAN14G3619 Fragaria x ananassa HOM05D001128 ORTHO05D000721 6.9e-09 65.1 189 34.4
Glyma.07G141000 Glycine max HOM05D001128 ORTHO05D000721 6.9e-09 65.1 199 36.7
Phvul.008G228300 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 6.9e-09 65.1 162 37.0
Gohir.A09G161600 Gossypium hirsutum HOM05D001128 ORTHO05D000721 9.1e-09 64.7 195 35.4
Hma1.2p1_0026F.1_g016650 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 9.1e-09 64.7 191 31.4
Gohir.A04G086100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.2e-08 64.3 185 35.1
CsaV3_5G008580 Cucumis sativus L. HOM05D001128 ORTHO05D000721 1.5e-08 63.9 181 33.1
Nitab4.5_0000243g0040 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.0e-08 63.5 213 30.5
FvH4_6g12650 Fragaria vesca HOM05D001128 ORTHO05D000721 2.6e-08 63.2 200 34.5
Psat0s1845g0240 Pisum sativum HOM05D001128 ORTHO05D000721 2.6e-08 63.2 212 33.0
Duzib128G0075 Durio zibethinus HOM05D001128 ORTHO05D000721 3.4e-08 62.8 184 33.2
Lj1A946G35 Lonicera japonica HOM05D001128 ORTHO05D000721 3.4e-08 62.8 183 33.3
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 3.4e-08 62.8 64 51.6
Ca_05916_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 4.5e-08 62.4 190 34.2
Nitab4.5_0000652g0060 Nicotiana tabacum HOM05D001128 ORTHO05D000721 4.5e-08 62.4 192 31.8
Peaxi162Scf00132g00911 Petunia axillaris HOM05D001128 ORTHO05D000721 4.5e-08 62.4 79 48.1
Sabra16G0104100 Salix brachista HOM05D001128 ORTHO05D000721 5.9e-08 62.0 194 34.5
COL.COLO4_14683 Corchorus olitorius HOM05D001128 ORTHO05D000721 7.7e-08 61.6 177 36.2
Potri.006G093000 Populus trichocarpa HOM05D001128 ORTHO05D000721 7.7e-08 61.6 199 34.2
Sopen09g006510 Solanum pennellii HOM05D001128 ORTHO05D000721 7.7e-08 61.6 176 34.7
FAN05G2922 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.0e-07 61.2 186 32.3
MD01G1142200 Malus domestica HOM05D001128 ORTHO05D000721 1.0e-07 61.2 179 35.8
Nitab4.5_0002823g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.0e-07 61.2 192 32.3
RcHm_v2.0_Chr3g0464501 Rosa chinensis HOM05D001128 ORTHO05D000721 1.3e-07 60.8 192 34.4
Solyc09g011690.4 Solanum lycopersicum HOM05D001128 ORTHO05D000721 1.3e-07 60.8 181 35.4
Ciclev10011799m.g Citrus clementina HOM05D001128 ORTHO05D000721 1.7e-07 60.5 72 51.4
Cc06_g02010 Coffea canephora HOM05D001128 ORTHO05D000721 1.7e-07 60.5 80 46.2
PGSC0003DMG400011730 Solanum tuberosum HOM05D001128 ORTHO05D000721 1.7e-07 60.5 80 47.5
TWI53G0706 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 1.7e-07 60.5 86 47.7
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 1.7e-07 60.5 190 32.6
DCAR_028803 Daucus carota HOM05D001128 ORTHO05D000721 2.2e-07 60.1 80 53.8
THA.LOC104806538 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 2.2e-07 60.1 190 34.7
Glyma.11G225400 Glycine max HOM05D001128 ORTHO05D000721 2.9e-07 59.7 83 45.8
Nitab4.5_0000008g0230 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.9e-07 59.7 174 34.5
Actinidia13898 Actinidia chinensis HOM05D001128 ORTHO05D000721 3.8e-07 59.3 186 32.8
Duzib093G0147 Durio zibethinus HOM05D001128 ORTHO05D000721 3.8e-07 59.3 184 34.2
Potri.016G105000 Populus trichocarpa HOM05D001128 ORTHO05D000721 3.8e-07 59.3 196 33.7
FAN09G1692 Fragaria x ananassa HOM05D001128 ORTHO05D000721 5.0e-07 58.9 186 31.2
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 6.5e-07 58.5 56 55.4
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 6.5e-07 58.5 56 55.4
Lj6g0007644 Lotus japonicus HOM05D001128 ORTHO05D000721 6.5e-07 58.5 79 40.5
Lalb_Chr15g0084451 Lupinus albus HOM05D001128 ORTHO05D000721 6.5e-07 58.5 67 44.8
VMungo0647G0267 Vigna mungo HOM05D001128 ORTHO05D000721 6.5e-07 58.5 162 35.8
Lsat_1_v5_gn_8_14501 Lactuca sativa HOM05D001128 ORTHO05D000721 8.5e-07 58.2 103 45.6
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.1e-06 57.8 56 53.6
Nitab4.5_0003264g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.1e-06 57.8 175 33.7
MSTRG.10240 Avicennia marina HOM05D001128 ORTHO05D000721 1.4e-06 57.4 89 43.8
Hma1.2p1_1521F.1_g288670 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 1.4e-06 57.4 200 31.0
Manes.07G123100 Manihot esculenta HOM05D001128 ORTHO05D000721 1.4e-06 57.4 186 28.5
Peaxi162Scf00009g03319 Petunia axillaris HOM05D001128 ORTHO05D000721 1.4e-06 57.4 74 48.6
FAN02G4298 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.9e-06 57.0 197 32.0
Glyma.18G031800 Glycine max HOM05D001128 ORTHO05D000721 1.9e-06 57.0 159 31.4
Atru.chr8.2106 Acer truncatum HOM05D001128 ORTHO05D000721 4.2e-06 55.8 64 53.1
Medtr5g081460 Medicago truncatula HOM05D001128 ORTHO05D000721 4.2e-06 55.8 81 50.6
THA.LOC104824295 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 4.2e-06 55.8 70 45.7
CDE09G1396 Ceratophyllum demersum HOM05D001128 ORTHO05D000721 5.5e-06 55.5 79 44.3
PGSC0003DMG400011013 Solanum tuberosum HOM05D001128 ORTHO05D000721 5.5e-06 55.5 202 30.7
ECA238G0704 Erigeron canadensis HOM05D001128 ORTHO05D000721 7.2e-06 55.1 77 44.2
Solyc10g084970.2 Solanum lycopersicum HOM05D001128 ORTHO05D000721 7.2e-06 55.1 199 31.7
CDE02G2787 Ceratophyllum demersum HOM05D001128 ORTHO05D000721 9.4e-06 54.7 79 43.0
HanXRQChr14g0458491 Helianthus annuus HOM05D001128 ORTHO05D000721 9.4e-06 54.7 95 38.9
Lalb_Chr10g0104881 Lupinus albus HOM05D001128 ORTHO05D000721 9.4e-06 54.7 80 42.5
PGSC0003DMG400019191 Solanum tuberosum HOM05D001128 ORTHO05D000721 9.4e-06 54.7 81 44.4


User provided reference genes

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