Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 6.8e-87 323.9 162 100.0
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 1.8e-18 96.7 173 40.5
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 2.3e-18 96.3 176 39.8
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 5.2e-18 95.1 157 39.5
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 1.2e-17 94.0 176 39.8
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 2.2e-16 89.7 165 40.6
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 3.7e-16 89.0 151 46.4
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 4.1e-15 85.5 164 41.5
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 5.4e-15 85.1 168 44.0
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 5.9e-14 81.6 165 38.2
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 7.7e-14 81.3 170 38.8
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.0e-13 80.9 162 41.4
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.3e-13 80.5 153 39.9
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 2.2e-13 79.7 162 41.4
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 2.2e-13 79.7 162 41.4
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 5.0e-13 78.6 164 37.2
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 5.0e-13 78.6 160 40.6
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 1.1e-12 77.4 171 38.0
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 4.2e-12 75.5 163 36.8
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 4.2e-12 75.5 159 39.6
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 5.5e-12 75.1 155 38.7
FAN21G1828 Fragaria x ananassa HOM05D020126 ORTHO05D004423 7.2e-12 74.7 170 38.2
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 9.5e-12 74.3 155 43.2
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.6e-11 73.6 170 38.2
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.6e-11 73.6 169 39.6
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 2.1e-11 73.2 161 38.5
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 3.6e-11 72.4 161 37.9
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 3.6e-11 72.4 162 37.0
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.7e-11 72.0 163 38.0
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 4.7e-11 72.0 153 37.3
FvH4_3g00610 Fragaria vesca HOM05D020126 ORTHO05D004423 1.0e-10 70.9 168 36.3
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.0e-10 70.9 164 39.0
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 1.0e-10 70.9 162 37.7
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.4e-10 70.5 166 38.6
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 1.8e-10 70.1 164 38.4
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.3e-10 69.7 152 38.2
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 6.8e-10 68.2 158 37.3
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 8.8e-10 67.8 151 37.7
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.5e-09 67.0 159 39.0
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 1.5e-09 67.0 171 38.0
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.0e-09 66.6 166 37.3
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 2.0e-09 66.6 152 39.5
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 2.6e-09 66.2 165 40.0
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.6e-09 66.2 163 36.8
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.4e-09 65.9 150 38.0
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.4e-09 65.9 173 38.2
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 3.4e-09 65.9 171 36.8
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 7.5e-09 64.7 170 37.1
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.5e-09 64.7 173 37.6
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 7.5e-09 64.7 153 38.6
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 7.5e-09 64.7 164 36.6
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.3e-08 63.9 162 37.7
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.3e-08 63.9 153 39.9
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.7e-08 63.5 150 37.3
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 2.2e-08 63.2 92 45.7
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 4.9e-08 62.0 179 35.8
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.1e-07 60.8 153 35.3
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 1.4e-07 60.5 150 38.0
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.8e-07 60.1 164 37.8
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.8e-07 60.1 150 35.3
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.8e-07 60.1 150 35.3
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 2.4e-07 59.7 164 36.0
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 2.4e-07 59.7 164 37.8
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.4e-07 59.7 151 34.4
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.1e-07 59.3 163 34.4
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.1e-07 59.3 163 37.4
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 4.1e-07 58.9 159 34.0
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 5.4e-07 58.5 151 35.8
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 5.4e-07 58.5 148 37.2
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.0e-07 58.2 162 37.7
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 7.0e-07 58.2 153 34.0
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 7.0e-07 58.2 151 35.1
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 7.0e-07 58.2 165 35.2
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 9.2e-07 57.8 158 33.5
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 1.2e-06 57.4 149 34.2
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 1.2e-06 57.4 149 34.2
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 1.6e-06 57.0 154 36.4
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.6e-06 57.0 170 37.1
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 1.6e-06 57.0 155 36.1
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 2.7e-06 56.2 150 34.0
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.7e-06 56.2 150 34.0
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.7e-06 56.2 150 34.0
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.7e-06 56.2 150 34.0
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 3.5e-06 55.8 173 35.8
CDE04G1256 Ceratophyllum demersum HOM05D000020 ORTHO05D000156 3.5e-06 55.8 134 38.1
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 4.5e-06 55.5 161 31.7
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 4.5e-06 55.5 93 39.8
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 5.9e-06 55.1 90 42.2
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 5.9e-06 55.1 150 35.3
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 5.9e-06 55.1 150 33.3
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 5.9e-06 55.1 155 37.4
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 5.9e-06 55.1 169 33.7
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 5.9e-06 55.1 151 33.8
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 7.7e-06 54.7 90 42.2


User provided reference genes

Program Settings