Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 2.5e-84 315.5 169 100.0
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 6.8e-37 157.9 124 72.6
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 8.9e-37 157.5 130 68.5
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 2.6e-36 156.0 130 66.2
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 4.4e-36 155.2 197 49.7
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 7.5e-36 154.5 125 68.8
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 2.2e-35 152.9 130 67.7
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 2.8e-35 152.5 130 66.9
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 2.8e-35 152.5 130 64.6
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 3.1e-34 149.1 131 63.4
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 5.4e-34 148.3 193 48.2
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 5.4e-34 148.3 149 56.4
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 7.0e-34 147.9 145 62.1
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 7.0e-34 147.9 126 65.9
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 9.2e-34 147.5 140 62.1
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.2e-33 147.1 157 54.8
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.6e-33 146.7 148 60.1
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.0e-33 146.4 124 61.3
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 2.0e-33 146.4 190 49.5
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.0e-33 146.4 141 59.6
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 2.7e-33 146.0 179 50.8
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.5e-33 145.2 143 60.8
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 4.5e-33 145.2 141 56.0
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 5.9e-33 144.8 130 58.5
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 7.8e-33 144.4 161 57.1
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.3e-32 143.7 200 47.5
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.3e-32 143.7 151 56.3
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.7e-32 143.3 134 61.9
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.9e-32 142.5 162 55.6
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 2.9e-32 142.5 145 55.9
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 2.9e-32 142.5 129 62.0
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 3.9e-32 142.1 130 62.3
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.0e-32 141.7 124 62.9
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 6.6e-32 141.4 126 60.3
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 8.6e-32 141.0 138 56.5
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.9e-31 139.8 131 62.6
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 3.3e-31 139.0 135 61.5
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 3.3e-31 139.0 132 63.6
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 4.3e-31 138.7 167 49.1
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 5.6e-31 138.3 110 70.9
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.6e-31 138.3 131 59.5
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 7.3e-31 137.9 150 53.3
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 9.5e-31 137.5 141 53.9
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.2e-30 137.1 159 55.3
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.1e-30 136.3 133 61.7
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 2.1e-30 136.3 149 57.7
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.8e-30 136.0 147 58.5
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 4.7e-30 135.2 157 51.6
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 4.7e-30 135.2 165 52.7
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 6.1e-30 134.8 138 60.9
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.0e-29 134.0 130 57.7
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.3e-29 132.9 130 59.2
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.3e-29 132.9 133 57.1
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.3e-29 132.9 129 58.1
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 2.3e-29 132.9 199 45.2
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 3.1e-29 132.5 157 52.9
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 3.1e-29 132.5 109 64.2
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.2e-29 131.7 131 59.5
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 8.9e-29 131.0 150 52.7
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.2e-28 130.6 107 67.3
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.5e-28 130.2 167 52.7
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.5e-28 130.2 111 64.0
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 2.0e-28 129.8 130 57.7
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.0e-28 129.8 130 57.7
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 2.0e-28 129.8 155 55.5
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 2.0e-28 129.8 132 58.3
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 7.5e-28 127.9 190 47.4
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 7.5e-28 127.9 136 55.1
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 7.5e-28 127.9 127 55.9
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 1.7e-27 126.7 157 51.6
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.2e-27 126.3 130 56.2
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.1e-26 124.0 173 48.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.9e-26 123.2 128 56.2
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 1.9e-26 123.2 125 56.0
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 1.9e-26 123.2 142 54.2
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.9e-26 123.2 163 49.1
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 2.4e-26 122.9 135 51.9
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 2.4e-26 122.9 130 56.2
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 7.0e-26 121.3 118 59.3
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.6e-25 120.2 173 49.7
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.6e-25 120.2 149 52.3
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.6e-25 120.2 146 53.4
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 2.0e-25 119.8 179 45.3
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.0e-24 117.5 129 54.3
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.0e-24 117.5 147 51.7
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.3e-24 117.1 147 51.7
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.7e-24 116.7 132 56.1
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.3e-24 116.3 174 45.4
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 2.3e-24 116.3 105 63.8
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 3.0e-24 115.9 133 54.9
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 3.0e-24 115.9 171 44.4
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.0e-24 115.9 136 56.6
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 6.6e-24 114.8 176 45.5
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 8.6e-24 114.4 159 50.9
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 1.1e-23 114.0 139 50.4
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.5e-23 113.6 141 53.2
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 1.9e-23 113.2 147 51.7
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.9e-23 113.2 139 48.9
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.1e-22 109.8 164 44.5
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.1e-22 109.8 148 51.4
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 3.6e-22 109.0 164 44.5
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 3.6e-22 109.0 164 44.5
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 4.7e-22 108.6 177 44.1
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 6.2e-22 108.2 127 50.4
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 6.2e-22 108.2 127 50.4
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 1.1e-21 107.5 83 66.3
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.8e-21 106.7 76 72.4
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 3.1e-21 105.9 167 44.3
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 3.1e-21 105.9 166 44.6
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 5.2e-21 105.1 91 64.8
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.2e-20 104.0 122 52.5
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.2e-20 104.0 122 52.5
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.2e-20 104.0 122 52.5
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 2.6e-20 102.8 149 47.7
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 5.8e-20 101.7 122 49.2
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 5.8e-20 101.7 122 49.2
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 7.5e-20 101.3 173 42.8
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 1.3e-19 100.5 157 44.6
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.2e-19 99.8 96 59.4
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 2.9e-19 99.4 180 45.6
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 3.7e-19 99.0 169 40.8
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 3.7e-19 99.0 82 63.4
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 3.7e-19 99.0 166 46.4
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 4.9e-19 98.6 95 56.8
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 4.9e-19 98.6 163 41.1
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 6.4e-19 98.2 100 58.0
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.1e-18 97.4 167 40.1
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 2.4e-18 96.3 135 47.4
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.4e-18 96.3 106 55.7
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 4.6e-17 92.0 196 40.8
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.0e-16 89.4 121 50.4
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 3.9e-16 89.0 149 41.6
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.9e-16 89.0 86 62.8
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.6e-16 88.2 63 66.7
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 6.6e-16 88.2 184 41.8
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 6.6e-16 88.2 184 41.8
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 8.6e-16 87.8 184 42.4
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 2.8e-14 82.8 191 38.7
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 5.2e-13 78.6 53 81.1
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 4.4e-12 75.5 85 50.6
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.3e-11 73.9 56 73.2
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.1e-10 70.9 156 39.1
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.4e-10 70.5 47 72.3
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 3.5e-09 65.9 166 36.7
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.0e-09 65.1 45 73.3
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.0e-08 62.8 58 58.6
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.9e-08 62.4 114 43.9
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 5.1e-08 62.0 58 65.5
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 6.6e-08 61.6 149 34.2
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 9.5e-07 57.8 45 64.4


User provided reference genes

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