Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 0.0e+00 1439.9 746 100.0
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 5.7e-136 489.2 768 44.3
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 3.4e-133 479.9 766 43.3
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 2.2e-127 460.7 923 38.0
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 2.2e-124 450.7 773 40.1
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 2.9e-116 423.7 907 37.7
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.8e-110 404.4 776 38.8
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 7.7e-109 399.1 784 40.6
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 5.0e-108 396.4 760 40.0
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 4.7e-106 389.8 770 40.0
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 1.4e-105 388.3 765 39.5
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 4.0e-105 386.7 750 39.6
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.8e-103 380.6 752 39.1
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 8.3e-103 379.0 851 36.0
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.4e-102 378.3 761 38.5
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.4e-102 377.5 757 39.0
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.1e-102 376.7 749 37.4
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.1e-102 376.7 749 37.4
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 2.5e-99 367.5 870 35.2
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.2e-98 365.2 779 38.1
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.8e-97 361.3 753 37.7
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 3.0e-97 360.5 759 39.0
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.0e-97 360.5 774 36.2
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 4.4e-96 356.7 760 37.9
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 1.3e-95 355.1 845 36.3
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.1e-94 350.5 759 37.8
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 4.1e-94 350.1 847 35.8
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 3.8e-92 343.6 821 35.3
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 5.0e-92 343.2 761 36.8
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.1e-91 342.0 859 34.9
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 2.5e-91 340.9 712 37.8
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 5.6e-91 339.7 798 35.8
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.6e-90 338.2 764 36.9
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 2.1e-90 337.8 833 36.4
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 6.8e-89 332.8 723 38.2
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 8.9e-89 332.4 675 39.7
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 2.6e-88 330.9 847 34.0
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 4.9e-87 326.6 751 36.4
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 4.9e-87 326.6 749 35.8
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 8.3e-87 325.9 671 40.2
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 9.2e-86 322.4 800 34.5
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.6e-85 321.6 764 34.4
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.0e-85 321.2 669 39.6
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 2.7e-85 320.9 769 35.4
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 3.9e-84 317.0 746 35.4
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 6.6e-84 316.2 380 49.2
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.1e-83 315.5 809 35.0
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 1.5e-83 315.1 747 36.1
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 8.3e-79 299.3 866 33.6
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.7e-77 294.3 762 34.8
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 4.6e-77 293.5 791 32.6
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 4.6e-77 293.5 782 33.1
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.0e-76 290.8 764 35.1
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 8.6e-76 289.3 750 34.7
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 1.1e-75 288.9 767 34.2
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 1.1e-75 288.9 668 37.3
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.3e-75 287.0 768 34.9
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 5.6e-75 286.6 927 30.4
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 8.1e-74 282.7 778 32.3
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 1.8e-73 281.6 774 32.0
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.3e-73 281.2 449 42.3
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 2.0e-72 278.1 787 30.4
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 2.6e-72 277.7 750 32.3
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 3.4e-72 277.3 786 33.1
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 5.8e-72 276.6 955 29.3
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 3.7e-71 273.9 553 38.3
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 4.9e-71 273.5 848 31.1
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 6.4e-71 273.1 717 35.8
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 4.1e-70 270.4 622 35.4
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 4.1e-70 270.4 805 33.0
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 2.7e-69 267.7 729 34.7
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 6.0e-69 266.5 685 36.1
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 1.3e-68 265.4 679 34.6
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 1.1e-67 262.3 760 32.1
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 1.8e-65 255.0 748 31.1
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.8e-65 255.0 803 31.0
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.2e-65 253.4 799 30.0
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 5.2e-65 253.4 754 31.2
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.8e-65 253.1 725 33.4
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 8.9e-65 252.7 692 33.2
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 2.2e-63 248.1 753 32.4
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 8.4e-63 246.1 774 31.9
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.4e-62 245.4 750 31.1
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 1.4e-62 245.4 726 32.2
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 7.1e-62 243.0 938 28.6
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 2.7e-61 241.1 752 31.2
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 7.3e-59 233.0 761 31.3
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.6e-58 231.9 797 30.1
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 4.7e-58 230.3 438 38.4
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.1e-57 229.2 610 35.1
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 4.0e-57 227.3 712 31.3
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 6.9e-57 226.5 792 31.2
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 8.9e-57 226.1 748 31.0
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.0e-56 224.9 745 30.6
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 4.4e-56 223.8 507 37.1
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 4.9e-55 220.3 747 30.5
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 4.9e-55 220.3 941 28.9
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 6.4e-55 219.9 759 29.1
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 1.9e-54 218.4 959 28.2
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 1.3e-52 212.2 798 28.8
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 4.3e-51 207.2 791 29.1
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 1.8e-49 201.8 812 29.8
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 2.4e-49 201.4 796 29.1
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 2.4e-49 201.4 794 29.1
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 9.9e-48 196.1 686 30.2
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.1e-46 192.6 801 28.8
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.9e-46 191.8 767 29.9
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 4.6e-45 187.2 759 29.1
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 7.9e-45 186.4 744 29.0
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 1.3e-44 185.7 761 28.1
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 2.8e-42 177.9 386 38.3
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 4.8e-42 177.2 535 31.8
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 6.2e-42 176.8 754 28.0
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 2.4e-41 174.9 709 27.8
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 4.0e-41 174.1 758 28.1
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 6.4e-39 166.8 759 27.7
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 4.2e-38 164.1 796 26.5
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.6e-37 162.2 623 30.3
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 7.9e-37 159.8 263 43.7
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 3.9e-36 157.5 798 27.4
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.4e-32 144.4 186 47.8
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 4.9e-31 140.6 401 31.9
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 5.7e-27 127.1 649 25.9
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 4.8e-26 124.0 396 33.3
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.4e-25 121.7 122 57.4
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 2.2e-23 115.2 147 47.6
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 8.5e-23 113.2 125 53.6
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.1e-22 112.8 107 57.9
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 2.5e-19 101.7 839 21.8
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 8.2e-18 96.7 156 39.7
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 6.9e-17 93.6 254 31.9
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 6.9e-17 93.6 170 41.2
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 9.1e-17 93.2 83 51.8
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 2.6e-16 91.7 115 45.2
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 7.7e-16 90.1 650 24.3
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.7e-15 89.0 87 56.3
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.4e-14 85.9 145 37.9
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 7.9e-13 80.1 247 26.7
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 3.9e-12 77.8 317 24.9
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 2.0e-11 75.5 104 39.4
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 7.4e-11 73.6 119 39.5
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 3.1e-09 68.2 684 23.4
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 5.3e-09 67.4 688 23.4
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 6.9e-09 67.0 208 30.3
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 6.5e-07 60.5 117 39.3


User provided reference genes

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