Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.4e-97 359.8 208 100.0
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 3.1e-68 262.3 210 71.0
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 7.0e-68 261.2 210 71.0
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.0e-66 257.3 210 68.6
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 2.3e-66 256.1 210 67.6
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.5e-65 253.4 201 69.7
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.5e-65 253.4 212 67.5
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.5e-65 253.4 212 67.5
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.9e-65 253.1 212 66.5
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 2.5e-65 252.7 210 66.7
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.5e-65 252.7 210 67.1
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 9.5e-65 250.8 210 68.1
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.2e-64 250.4 211 67.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.6e-64 250.0 208 64.4
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 3.6e-64 248.8 204 67.6
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.7e-64 248.4 204 68.1
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 4.7e-64 248.4 209 66.5
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.7e-64 248.4 211 67.3
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 8.0e-64 247.7 199 67.8
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.0e-64 247.7 210 67.1
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.0e-63 247.3 210 65.7
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 1.4e-63 246.9 206 67.5
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 3.0e-63 245.7 210 65.7
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.0e-63 245.7 210 65.2
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 4.0e-63 245.4 208 67.3
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 5.2e-63 245.0 210 66.7
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 6.8e-63 244.6 205 67.3
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 6.8e-63 244.6 210 65.2
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 8.9e-63 244.2 211 66.8
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 1.2e-62 243.8 206 67.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.2e-62 243.8 210 65.7
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 1.5e-62 243.4 208 65.4
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.5e-62 243.4 194 68.6
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.5e-62 243.4 210 65.2
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 2.0e-62 243.0 210 64.8
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 2.0e-62 243.0 202 65.8
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 3.4e-62 242.3 211 64.5
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 3.4e-62 242.3 205 63.9
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 5.7e-62 241.5 208 64.4
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 5.7e-62 241.5 208 64.4
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.9e-61 238.4 200 65.5
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.1e-60 237.3 208 63.9
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.4e-60 236.9 206 64.1
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.4e-60 236.9 207 65.2
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.8e-60 236.5 207 64.3
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 2.4e-60 236.1 209 63.6
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 3.1e-60 235.7 165 75.2
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 7.0e-60 234.6 180 72.8
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 7.0e-60 234.6 211 63.0
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 9.2e-60 234.2 190 67.4
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.2e-59 233.8 175 70.3
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.2e-59 233.8 208 63.0
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 2.0e-59 233.0 206 62.6
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.0e-59 233.0 206 62.6
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 4.5e-59 231.9 206 61.7
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 4.5e-59 231.9 206 62.1
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 5.9e-59 231.5 210 61.4
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 7.8e-59 231.1 206 63.6
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 7.8e-59 231.1 207 62.8
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.0e-58 230.7 206 62.1
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 1.3e-58 230.3 209 62.2
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.7e-58 229.9 171 70.8
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.7e-58 229.9 207 62.3
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.7e-58 229.9 211 62.6
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.3e-58 229.6 208 60.6
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.3e-58 229.6 206 61.2
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.9e-58 229.2 208 63.0
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 2.9e-58 229.2 208 60.1
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 3.8e-58 228.8 168 69.6
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 6.6e-58 228.0 208 63.0
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.1e-57 227.3 213 60.6
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.1e-57 227.3 185 65.9
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.9e-57 226.5 208 62.5
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.9e-57 226.5 194 63.4
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.9e-57 226.5 209 61.2
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.9e-57 226.5 209 61.2
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.3e-57 225.3 174 67.2
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 4.3e-57 225.3 206 61.2
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.3e-57 225.3 166 71.1
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.6e-57 224.9 185 65.9
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 5.6e-57 224.9 208 61.5
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.2e-56 223.8 185 65.4
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.6e-56 223.4 206 60.7
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.6e-56 223.4 211 59.7
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.6e-56 223.4 178 66.9
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.8e-56 222.6 206 59.2
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.6e-56 222.2 187 63.6
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 3.6e-56 222.2 210 60.0
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 4.7e-56 221.9 208 59.6
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 6.1e-56 221.5 206 58.3
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.0e-55 220.7 219 59.4
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.0e-55 220.7 208 60.6
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.0e-55 220.7 206 58.7
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.4e-55 220.3 206 59.7
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.4e-55 220.3 208 59.1
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.3e-55 219.5 174 70.1
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 2.3e-55 219.5 191 66.5
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 3.1e-55 219.2 175 65.7
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 3.1e-55 219.2 208 59.1
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 6.8e-55 218.0 183 61.7
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.6e-54 216.1 168 67.9
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 2.6e-54 216.1 206 57.8
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 4.4e-54 215.3 207 58.9
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 4.4e-54 215.3 174 66.1
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 4.4e-54 215.3 169 65.7
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 5.8e-54 214.9 208 58.7
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 9.8e-54 214.2 208 57.2
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.9e-53 212.6 172 66.3
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 4.9e-53 211.8 188 62.8
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 4.9e-53 211.8 205 58.0
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 6.4e-53 211.5 163 68.1
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.1e-52 210.7 208 57.7
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.9e-52 209.9 209 57.4
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 3.2e-52 209.1 206 57.3
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 5.4e-52 208.4 209 58.4
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 9.2e-52 207.6 207 56.5
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.0e-51 206.5 171 62.6
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 4.6e-51 205.3 177 65.0
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 5.0e-50 201.8 256 49.6
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 5.0e-50 201.8 208 57.7
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.2e-48 197.2 175 59.4
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 3.6e-48 195.7 206 54.9
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 6.8e-47 191.4 193 58.0
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 8.9e-47 191.0 188 54.3
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.8e-46 188.3 214 56.5
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 1.7e-45 186.8 158 60.8
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 2.1e-43 179.9 174 58.6
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 2.3e-42 176.4 163 59.5
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.3e-42 176.4 145 71.0
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 6.6e-42 174.9 209 51.7
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 8.6e-42 174.5 209 51.7
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.1e-41 174.1 132 64.4
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 8.9e-39 164.5 165 55.2
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.5e-38 163.7 177 55.4
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.0e-38 163.3 121 67.8
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 4.4e-38 162.2 120 67.5
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.4e-36 157.1 169 56.8
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 4.6e-35 152.1 169 46.2
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.0e-34 149.4 154 47.4
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.0e-34 149.4 130 63.8
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 7.3e-33 144.8 82 84.1
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 7.3e-33 144.8 114 63.2
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.7e-32 142.1 130 58.5
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.2e-32 141.7 130 60.0
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.1e-32 141.4 129 57.4
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 2.4e-31 139.8 135 54.8
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.4e-31 139.8 130 60.8
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 3.4e-30 136.0 164 43.9
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.2e-29 133.3 208 42.8
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 8.4e-29 131.3 103 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 9.2e-28 127.9 154 41.6
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.7e-27 126.3 150 41.3
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 8.7e-26 121.3 117 53.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 8.1e-24 114.8 125 58.4
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 3.0e-18 96.3 199 37.2
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.1e-16 90.1 86 58.1
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.6e-14 83.2 57 70.2
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-07 61.2 86 51.2
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 1.1e-07 61.2 172 34.3
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.6e-06 56.6 98 42.9
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 5.8e-06 55.5 43 60.5


User provided reference genes

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