Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 2.5e-139 499.2 339 100.0
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 2.7e-101 372.9 316 81.0
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 2.7e-101 372.9 327 71.9
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.0e-100 370.9 320 77.8
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 2.5e-99 366.3 340 78.2
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 4.3e-99 365.5 335 76.4
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 4.3e-99 365.5 335 76.4
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 4.3e-99 365.5 329 72.3
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.1e-97 360.9 330 78.2
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 1.2e-96 357.5 332 76.8
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.3e-95 354.0 316 75.3
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 1.7e-95 353.6 332 76.5
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.1e-94 350.9 332 67.8
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.9e-94 350.1 316 77.5
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.6e-93 347.1 340 70.6
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 4.6e-93 345.5 332 73.2
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 4.6e-93 345.5 311 77.8
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.0e-92 344.4 325 76.0
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.7e-92 343.6 314 71.7
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 2.3e-92 343.2 336 70.5
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 3.0e-92 342.8 340 68.2
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 5.1e-92 342.0 325 72.3
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.1e-92 342.0 324 75.9
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 2.5e-91 339.7 338 75.4
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 4.3e-91 339.0 336 76.2
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.3e-90 337.4 364 61.3
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 6.2e-90 335.1 314 72.3
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 8.1e-90 334.7 340 72.4
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.1e-89 334.3 327 68.2
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 4.0e-89 332.4 318 75.5
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 6.9e-89 331.6 340 72.4
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.5e-88 330.5 348 69.8
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.5e-88 330.5 331 73.4
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 2.0e-88 330.1 331 73.4
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 5.8e-88 328.6 340 72.4
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.3e-87 327.4 339 69.6
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.9e-87 326.2 324 73.8
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 2.9e-87 326.2 332 72.6
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 3.8e-87 325.9 329 73.3
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.1e-86 324.3 348 69.3
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 2.4e-86 323.2 318 75.5
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 4.2e-86 322.4 337 70.0
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.4e-86 322.0 318 74.5
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.4e-86 322.0 318 74.5
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 7.1e-86 321.6 319 68.3
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 7.1e-86 321.6 315 68.6
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 7.1e-86 321.6 315 68.6
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-85 320.9 318 74.8
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-85 320.9 325 73.2
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.2e-85 320.9 324 73.8
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 3.5e-85 319.3 327 72.2
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 7.9e-85 318.2 328 70.7
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.3e-84 317.4 314 75.2
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 2.3e-84 316.6 311 67.8
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 2.3e-84 316.6 328 64.0
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 5.1e-84 315.5 334 72.5
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 5.1e-84 315.5 311 76.2
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 8.7e-84 314.7 319 72.4
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.1e-83 314.3 329 73.3
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 9.6e-83 311.2 319 71.5
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 9.6e-83 311.2 328 64.0
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 9.6e-83 311.2 330 71.5
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.6e-82 310.5 328 64.3
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 2.8e-82 309.7 319 75.2
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 3.7e-82 309.3 324 65.1
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 3.7e-82 309.3 319 70.8
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.1e-81 307.8 337 70.0
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.4e-81 307.4 328 63.7
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.8e-81 307.0 337 68.5
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.8e-81 307.0 322 67.4
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 3.1e-81 306.2 328 63.4
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 3.1e-81 306.2 328 63.7
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 3.1e-81 306.2 316 71.2
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 5.3e-81 305.4 309 67.3
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 9.0e-81 304.7 328 67.7
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.2e-80 304.3 254 76.4
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 2.6e-80 303.1 337 64.4
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 7.6e-80 301.6 357 59.7
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.3e-79 300.8 312 73.4
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 4.9e-79 298.9 323 63.5
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 4.9e-79 298.9 323 63.5
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 6.4e-79 298.5 319 64.9
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.1e-78 297.7 328 61.9
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 1.4e-78 297.4 330 70.3
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-78 297.4 318 69.2
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.4e-78 297.4 343 67.1
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.9e-78 297.0 328 62.5
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.9e-78 297.0 303 66.7
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 2.5e-78 296.6 324 69.8
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.7e-77 293.1 313 72.5
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 3.5e-77 292.7 337 65.0
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 7.9e-77 291.6 314 70.4
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.3e-76 290.8 323 65.0
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 3.0e-76 289.7 328 68.3
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 3.9e-76 289.3 298 75.5
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.5e-75 286.6 309 72.5
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 3.3e-75 286.2 318 61.3
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 9.6e-75 284.6 331 66.5
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.4e-73 280.0 314 69.1
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 9.0e-73 278.1 214 77.6
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 2.0e-72 276.9 320 67.2
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 3.4e-72 276.2 307 68.7
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 7.6e-72 275.0 314 71.7
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 3.8e-71 272.7 297 65.0
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 2.1e-69 266.9 314 64.0
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 3.5e-69 266.2 334 64.7
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 7.9e-69 265.0 305 61.0
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 3.0e-68 263.1 327 60.2
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 4.3e-67 259.2 214 65.9
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 5.7e-67 258.8 289 65.7
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.8e-66 256.5 290 71.0
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 4.8e-66 255.8 324 62.3
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.1e-65 253.1 310 61.0
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 4.1e-65 252.7 233 60.9
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 4.2e-62 242.7 162 79.0
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 5.5e-62 242.3 297 64.0
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 8.8e-60 235.0 214 72.4
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-55 220.7 204 68.1
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 2.9e-55 219.9 314 54.1
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-54 218.0 175 76.6
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.4e-54 217.6 308 56.8
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 3.6e-53 213.0 177 63.8
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-52 211.1 177 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.5e-51 207.6 315 55.6
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 9.7e-51 204.9 309 54.4
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-49 201.1 177 68.4
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 5.3e-49 199.1 305 54.8
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.2e-48 198.0 308 52.9
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 2.2e-47 193.7 182 59.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 6.5e-47 192.2 308 57.8
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.1e-46 191.4 134 74.6
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-46 191.0 182 68.1
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.5e-46 190.3 153 71.9
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 3.9e-44 183.0 214 52.3
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 1.1e-43 181.4 310 50.6
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.0e-43 180.6 177 57.6
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.4e-43 179.5 207 81.6
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 6.3e-42 175.6 161 60.2
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 8.2e-42 175.3 114 78.1
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-41 174.9 154 72.7
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 2.4e-41 173.7 113 77.9
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 3.1e-41 173.3 182 56.0
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 7.0e-41 172.2 148 80.4
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 3.5e-40 169.9 149 62.4
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.7e-39 167.5 123 69.9
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 6.5e-39 165.6 212 72.6
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 2.5e-38 163.7 308 51.9
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.3e-34 151.4 148 58.8
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 1.8e-33 147.5 167 56.9
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.2e-30 136.3 183 71.6
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.9e-24 115.9 84 73.8
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-23 114.0 84 72.6
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-23 114.0 84 72.6
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.7e-21 106.3 77 74.0
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 3.0e-20 103.6 144 43.8
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 4.0e-20 103.2 342 36.0
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.4e-17 94.7 97 58.8
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.8e-17 94.4 77 66.2
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 2.0e-16 90.9 97 56.7
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 7.3e-14 82.4 96 47.9
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 2.3e-12 77.4 96 43.8
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 4.0e-12 76.6 61 67.2
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 6.8e-12 75.9 53 69.8
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-11 75.1 50 66.0
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.4e-11 73.6 62 64.5
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 2.2e-10 70.9 47 72.3
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 5.4e-09 66.2 159 42.1
C05p31220 Brassica napus HOM05D000252 ORTHO05D004664 1.5e-06 58.2 31 87.1


User provided reference genes

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