Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 0.0e+00 1282.3 630 100.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 8.0e-301 1036.6 673 80.7
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 4.1e-212 741.9 685 57.4
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 3.5e-211 738.8 683 57.2
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.0e-210 734.9 683 56.8
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 8.5e-210 734.2 677 56.4
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 8.5e-210 734.2 676 58.6
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 2.7e-208 729.2 674 56.1
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.6e-208 728.8 685 55.8
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.5e-206 723.4 666 55.7
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.1e-204 717.2 665 56.4
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.1e-204 714.1 687 55.3
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.3e-202 709.5 695 54.5
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.1e-201 707.2 678 55.6
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.5e-201 706.1 670 55.1
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 3.3e-201 705.7 668 55.1
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 5.6e-201 704.9 671 54.1
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 8.0e-200 701.0 710 53.1
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 5.2e-199 698.4 668 54.6
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.0e-198 696.4 673 54.4
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 7.5e-198 694.5 664 54.4
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.3e-197 693.7 693 54.0
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.4e-196 690.3 705 53.2
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.4e-196 690.3 677 54.1
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.4e-196 689.5 687 52.3
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 5.4e-196 688.3 682 53.4
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 5.4e-196 688.3 680 52.4
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 5.4e-196 688.3 675 54.8
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.6e-195 685.3 694 53.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.8e-195 684.5 681 53.6
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.9e-194 682.2 669 53.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 8.6e-194 681.0 672 53.9
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-193 680.2 672 53.9
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.5e-193 680.2 681 53.3
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.5e-193 679.5 678 54.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.5e-193 679.5 677 53.6
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 7.3e-193 677.9 689 52.0
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 9.5e-193 677.6 687 53.4
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.2e-192 677.2 687 52.0
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.8e-192 676.0 675 53.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 2.8e-192 676.0 718 51.8
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 6.2e-192 674.9 667 53.5
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.2e-192 674.9 672 53.4
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 2.3e-191 672.9 671 52.5
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 4.0e-191 672.2 680 52.6
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 5.2e-191 671.8 678 53.5
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 8.9e-191 671.0 672 53.1
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 8.9e-191 671.0 680 52.8
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.6e-190 669.5 709 51.3
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 4.4e-190 668.7 668 52.7
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 5.8e-190 668.3 670 52.7
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.8e-190 668.3 679 51.1
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 7.5e-190 667.9 677 53.6
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.8e-190 667.5 679 50.8
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.7e-189 666.8 684 52.2
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.9e-189 666.0 672 53.7
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.7e-189 665.6 724 50.0
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 4.9e-189 665.2 681 52.4
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 4.9e-189 665.2 676 53.0
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.1e-188 664.1 677 53.8
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.6e-187 660.2 688 52.2
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.0e-187 659.8 674 52.2
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.0e-187 658.3 670 52.1
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.3e-186 656.4 676 51.2
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 8.6e-186 654.4 678 50.9
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.1e-185 654.1 717 49.9
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.5e-185 653.7 678 53.2
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.5e-185 653.7 683 49.2
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.5e-185 653.7 686 51.2
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.4e-182 642.5 677 51.4
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.9e-180 636.7 643 52.9
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 7.1e-180 634.8 687 49.9
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.5e-179 632.5 685 50.2
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 7.8e-179 631.3 675 50.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.7e-178 630.2 670 49.4
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.0e-178 629.4 687 49.5
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 6.6e-178 628.2 674 50.3
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 6.6e-178 628.2 616 53.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 2.5e-177 626.3 659 52.5
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.2e-176 624.0 604 54.6
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.8e-176 622.9 680 48.7
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.4e-175 620.5 677 48.4
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.8e-175 620.2 678 47.9
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.3e-175 619.8 672 49.4
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 4.4e-174 615.5 679 48.0
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 5.8e-174 615.1 675 48.7
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 9.9e-174 614.4 677 48.2
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 9.9e-174 614.4 677 48.2
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.3e-173 614.0 659 51.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-173 614.0 674 48.7
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.9e-173 612.1 684 47.7
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.4e-172 610.5 686 48.8
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.2e-172 609.4 622 51.6
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.1e-172 609.0 684 49.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.1e-172 609.0 681 49.0
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.2e-172 607.8 675 48.3
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 9.2e-172 607.8 677 47.7
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.7e-171 606.3 676 47.6
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 4.6e-171 605.5 841 43.4
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.0e-170 604.4 681 47.0
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.1e-169 600.9 696 46.8
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.5e-169 600.5 685 47.0
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.9e-169 600.1 682 47.8
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.6e-168 595.9 682 46.9
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.1e-167 594.3 587 53.5
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.9e-167 591.3 681 46.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 8.9e-167 591.3 588 53.2
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 4.4e-166 589.0 687 47.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.8e-165 585.9 679 46.4
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 6.4e-165 585.1 683 46.9
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 2.4e-164 583.2 679 47.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.6e-163 578.9 687 46.3
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.3e-162 577.4 702 45.9
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.9e-161 573.5 667 46.0
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.8e-159 567.0 658 46.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.8e-159 567.0 664 49.5
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 3.1e-159 566.2 672 47.6
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-156 557.8 718 44.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 4.3e-153 545.8 681 47.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-152 543.5 723 44.0
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 5.3e-151 538.9 736 40.9
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 3.4e-150 536.2 672 45.2
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.3e-149 534.3 687 45.0
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 8.4e-149 531.6 641 46.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.8e-146 523.9 689 43.7
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 5.1e-146 522.3 527 53.3
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.1e-135 488.0 549 49.4
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 4.3e-129 466.1 673 41.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.1e-127 459.9 683 42.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.0e-126 457.2 527 47.8
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.6e-115 421.0 671 40.1
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.5e-110 402.9 352 56.0
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 3.6e-107 393.3 549 41.9
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 3.4e-97 360.1 392 48.7
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 4.5e-94 349.7 454 44.3
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 5.9e-94 349.4 395 45.3
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 3.0e-90 337.0 429 42.4
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-88 331.3 334 50.6
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 3.3e-68 263.8 283 48.8
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 4.3e-68 263.5 316 46.2
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 7.1e-63 246.1 409 36.2
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 2.3e-61 241.1 207 60.9
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.6e-54 218.4 160 66.9
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 5.1e-53 213.4 566 29.9
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 7.3e-52 209.5 542 29.5
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 9.9e-49 199.1 241 44.4
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 4.2e-47 193.7 319 36.1
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.7e-46 191.0 568 28.0
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 3.5e-46 190.7 161 56.5
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.4e-41 174.1 380 32.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-39 169.1 173 53.2
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 6.0e-38 163.3 192 47.9
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 7.9e-38 162.9 122 61.5
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.6e-35 155.2 197 43.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.1e-34 152.5 170 45.9
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 3.2e-31 141.0 249 37.3
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.6e-30 138.7 252 34.9
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.5e-25 122.1 265 34.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.2e-24 118.2 136 43.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-24 117.9 104 55.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-24 117.9 104 55.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-24 117.9 104 55.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-23 115.9 168 42.3
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.4e-23 115.5 154 44.2
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-20 105.9 70 71.4
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 6.3e-19 100.1 144 36.1
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.2e-17 95.9 183 36.1
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.2e-14 85.9 233 29.2
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.6e-14 84.3 114 38.6
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.6e-11 75.5 89 48.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.4e-10 71.6 47 66.0
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.4e-10 71.6 47 66.0


User provided reference genes

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