Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 2.4e-52 208.4 94 100.0
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 9.0e-39 163.3 88 87.5
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 9.0e-39 163.3 87 87.4
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 1.2e-38 162.9 86 84.9
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 1.2e-38 162.9 87 87.4
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.6e-38 161.8 87 87.4
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 3.4e-38 161.4 91 83.5
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 5.8e-38 160.6 91 83.5
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 5.8e-38 160.6 91 82.4
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 9.9e-38 159.8 91 82.4
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.3e-37 159.5 86 82.6
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.3e-37 159.5 88 81.8
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.7e-37 159.1 87 82.8
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.2e-37 158.7 87 83.9
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 2.9e-37 158.3 90 80.0
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.9e-37 158.3 86 84.9
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.8e-37 157.9 86 84.9
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.8e-37 157.9 86 84.9
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.8e-37 157.9 86 84.9
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 6.4e-37 157.1 87 83.9
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.1e-36 156.4 86 82.6
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 1.4e-36 156.0 87 85.1
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.9e-36 155.6 87 81.6
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 1.9e-36 155.6 86 82.6
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.4e-36 155.2 87 80.5
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 3.2e-36 154.8 88 84.1
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 4.2e-36 154.5 87 82.8
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 5.4e-36 154.1 86 81.4
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 5.4e-36 154.1 87 85.1
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 7.1e-36 153.7 86 82.6
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 9.3e-36 153.3 86 81.4
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 9.3e-36 153.3 86 81.4
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.2e-35 152.9 86 82.6
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.6e-35 152.5 87 81.6
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 2.1e-35 152.1 86 81.4
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 2.1e-35 152.1 86 80.2
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.1e-35 152.1 86 81.4
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 2.7e-35 151.8 86 80.2
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.7e-35 151.8 87 79.3
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 2.7e-35 151.8 87 79.3
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 3.5e-35 151.4 80 83.8
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.5e-35 151.4 81 81.5
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.6e-35 151.0 87 81.6
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 4.6e-35 151.0 86 77.9
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 6.0e-35 150.6 87 82.8
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 7.9e-35 150.2 86 80.2
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 7.9e-35 150.2 86 79.1
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 7.9e-35 150.2 86 80.2
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 7.9e-35 150.2 79 84.8
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 7.9e-35 150.2 79 84.8
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 7.9e-35 150.2 79 84.8
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 7.9e-35 150.2 86 77.9
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.0e-34 149.8 87 74.7
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.0e-34 149.8 87 74.7
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.3e-34 149.4 87 80.5
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.3e-34 149.4 87 80.5
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.8e-34 149.1 87 79.3
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 3.0e-34 148.3 87 79.3
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 3.0e-34 148.3 86 79.1
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.0e-34 148.3 88 78.4
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.9e-34 147.9 87 78.2
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 5.1e-34 147.5 87 78.2
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 5.1e-34 147.5 87 75.9
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 6.7e-34 147.1 87 78.2
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 8.7e-34 146.7 86 79.1
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 8.7e-34 146.7 86 75.6
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.1e-33 146.4 87 78.2
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 1.1e-33 146.4 88 77.3
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.5e-33 146.0 87 75.9
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.5e-33 146.0 79 81.0
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.5e-33 146.0 79 81.0
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.9e-33 145.6 88 75.0
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.9e-33 145.6 87 73.6
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 4.3e-33 144.4 85 78.8
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 4.3e-33 144.4 85 78.8
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 4.3e-33 144.4 83 80.7
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 5.6e-33 144.1 86 75.6
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 5.6e-33 144.1 87 73.6
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.6e-33 144.1 87 75.9
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 7.4e-33 143.7 70 88.6
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 7.4e-33 143.7 81 81.5
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 9.6e-33 143.3 86 76.7
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 9.6e-33 143.3 86 82.6
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-32 142.9 78 82.1
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.3e-32 142.9 70 88.6
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 1.6e-32 142.5 78 82.1
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.6e-32 142.5 86 74.4
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.6e-32 142.5 86 74.4
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 2.1e-32 142.1 87 77.0
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 2.8e-32 141.7 90 77.8
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 4.8e-32 141.0 79 75.9
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 6.2e-32 140.6 79 75.9
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 8.1e-32 140.2 84 77.4
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 8.1e-32 140.2 86 73.3
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 1.4e-31 139.4 87 73.6
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.8e-31 139.0 86 76.7
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 2.4e-31 138.7 69 87.0
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 2.4e-31 138.7 86 75.6
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 2.4e-31 138.7 86 75.6
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 3.1e-31 138.3 86 77.9
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 4.0e-31 137.9 86 75.6
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 4.0e-31 137.9 85 75.3
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 5.3e-31 137.5 77 77.9
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-30 135.6 69 85.5
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 4.5e-30 134.4 72 80.6
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 9.9e-30 133.3 75 80.0
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.3e-29 132.9 91 67.0
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 1.1e-28 129.8 98 64.3
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 5.5e-28 127.5 62 87.1
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.8e-26 122.5 156 43.6
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 6.7e-26 120.6 62 83.9
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 6.9e-23 110.5 64 79.7
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 6.9e-23 110.5 83 65.1
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.6e-22 108.6 65 78.5
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 3.4e-22 108.2 86 60.5
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 5.8e-22 107.5 64 78.1
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 5.8e-22 107.5 63 82.5
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 1.0e-21 106.7 63 82.5
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 2.2e-21 105.5 64 79.7
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.2e-21 105.5 63 79.4
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 6.5e-21 104.0 63 81.0
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 6.5e-21 104.0 62 80.6
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 8.4e-21 103.6 63 79.4
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 3.5e-19 98.2 61 67.2
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 6.0e-19 97.4 58 74.1
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.0e-18 96.7 66 71.2
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.3e-18 96.3 62 71.0
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-18 96.3 63 73.0
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-18 96.3 63 73.0
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 3.0e-18 95.1 64 70.3
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.9e-18 94.7 61 72.1
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 8.7e-18 93.6 64 68.8
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-17 93.2 55 78.2
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.9e-17 92.4 61 70.5
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 7.4e-17 90.5 53 77.4
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 9.7e-17 90.1 61 68.9
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 9.7e-17 90.1 63 71.4
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 1.3e-16 89.7 57 73.7
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 2.2e-16 89.0 57 75.4
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 3.7e-16 88.2 63 73.0
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.7e-13 79.3 62 62.9
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.1e-12 76.6 39 87.2
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 4.2e-12 74.7 80 51.2
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.6e-11 72.8 66 50.0
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 5.1e-10 67.8 61 52.5


User provided reference genes

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