Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 9.3e-124 446.8 216 100.0
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.4e-108 396.4 197 97.5
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 8.6e-69 264.2 185 65.9
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.1e-68 263.8 195 59.5
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.5e-68 263.5 194 64.4
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 7.3e-68 261.2 187 64.7
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 7.3e-68 261.2 182 68.1
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.2e-67 260.4 181 65.7
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 4.7e-67 258.5 181 65.2
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 6.2e-67 258.1 181 64.6
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 6.2e-67 258.1 181 65.7
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 6.2e-67 258.1 209 58.9
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 6.2e-67 258.1 184 65.2
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 8.0e-67 257.7 180 65.6
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 8.0e-67 257.7 181 66.3
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 2.3e-66 256.1 188 63.3
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.3e-66 256.1 182 65.4
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 3.1e-66 255.8 182 67.0
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.1e-66 255.8 182 67.0
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 4.0e-66 255.4 186 66.1
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 4.0e-66 255.4 195 63.1
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 5.2e-66 255.0 181 65.7
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 5.2e-66 255.0 184 64.7
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 8.9e-66 254.2 180 65.0
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 8.9e-66 254.2 189 63.0
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.2e-65 253.8 181 65.7
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.5e-65 253.4 194 61.9
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 1.5e-65 253.4 183 62.8
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.5e-65 253.4 181 64.6
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 2.0e-65 253.1 194 62.4
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 2.6e-65 252.7 181 64.6
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 2.6e-65 252.7 181 65.2
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 4.4e-65 251.9 181 63.5
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 5.8e-65 251.5 194 63.4
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 5.8e-65 251.5 181 63.5
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 7.5e-65 251.1 181 64.1
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 7.5e-65 251.1 219 56.6
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.8e-65 250.8 199 60.8
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 9.8e-65 250.8 195 62.6
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.7e-64 250.0 199 60.8
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.9e-64 248.4 181 62.4
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 8.3e-64 247.7 183 63.4
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.4e-63 246.9 197 60.4
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.9e-63 246.5 183 63.4
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.9e-63 246.5 183 63.4
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.9e-63 246.5 185 62.7
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 3.2e-63 245.7 183 61.7
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 3.2e-63 245.7 188 60.1
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 4.1e-63 245.4 186 62.4
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 4.1e-63 245.4 184 63.0
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 4.1e-63 245.4 215 57.2
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.4e-63 245.0 183 65.0
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 5.4e-63 245.0 194 61.9
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 7.0e-63 244.6 181 60.2
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.6e-62 243.4 183 61.7
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.6e-62 243.4 187 60.4
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.6e-62 243.4 181 58.0
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.0e-62 243.0 181 63.5
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.7e-62 242.7 184 62.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 4.6e-62 241.9 179 63.7
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 4.6e-62 241.9 182 63.2
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-61 240.4 215 55.3
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.3e-61 239.6 181 59.7
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.3e-61 239.6 181 62.4
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.3e-61 239.6 184 60.3
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 6.6e-61 238.0 196 58.7
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 6.6e-61 238.0 184 60.9
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.5e-60 236.9 179 61.5
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.5e-60 236.9 184 60.9
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.5e-60 236.9 184 60.9
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.9e-60 236.5 195 59.0
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.9e-60 236.5 186 60.8
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.5e-60 236.1 183 60.7
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.3e-60 235.3 183 62.8
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 5.6e-60 235.0 162 64.2
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.2e-59 233.8 196 58.2
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.1e-59 233.0 183 61.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 3.6e-59 232.3 179 62.0
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 3.6e-59 232.3 189 58.7
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 4.7e-59 231.9 207 56.0
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 6.2e-59 231.5 200 55.0
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 6.2e-59 231.5 188 59.0
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.0e-58 228.8 182 59.9
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 5.2e-58 228.4 181 60.8
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 1.5e-57 226.9 193 59.1
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 2.6e-57 226.1 183 59.0
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 5.8e-57 224.9 181 58.0
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 5.8e-57 224.9 179 59.2
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 5.8e-57 224.9 169 62.7
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.3e-56 223.8 181 58.0
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 3.7e-56 222.2 173 59.5
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 3.7e-56 222.2 194 56.7
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.4e-55 220.3 192 54.7
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.4e-55 220.3 162 62.3
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 2.4e-55 219.5 179 56.4
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 4.1e-55 218.8 183 57.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 7.1e-55 218.0 203 53.7
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 3.9e-53 212.2 165 60.6
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 3.9e-53 212.2 190 56.3
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.1e-53 211.8 161 62.1
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 8.6e-53 211.1 174 56.3
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.5e-52 210.3 180 52.2
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.9e-52 209.9 164 60.4
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 2.5e-52 209.5 183 53.0
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 9.5e-52 207.6 186 52.7
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.2e-50 201.8 174 55.7
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 4.1e-47 192.2 162 53.1
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-46 189.5 175 50.3
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.5e-46 189.1 151 57.6
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 7.8e-46 188.0 139 64.0
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.1e-45 185.3 173 49.7
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.5e-44 183.7 134 61.9
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.9e-44 183.3 183 48.1
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.5e-44 183.0 171 50.3
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.2e-43 180.6 170 52.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.6e-43 180.3 195 48.2
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 2.1e-43 179.9 134 60.4
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-42 177.6 134 59.0
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.9e-42 174.9 156 52.6
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.6e-41 171.4 164 49.4
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 1.6e-38 163.7 186 46.8
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.6e-38 162.2 143 51.0
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 2.3e-37 159.8 181 47.5
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.6e-35 153.7 183 43.2
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.8e-35 152.1 132 52.3
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.2e-35 151.8 175 44.0
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 3.1e-34 149.4 125 60.8
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 2.0e-33 146.7 113 58.4
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.1e-30 136.7 181 43.1
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.7e-30 136.3 121 53.7
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.6e-28 127.9 83 73.5
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 2.8e-27 126.3 90 63.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 9.9e-25 117.9 192 35.9
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.7e-19 99.4 93 47.3
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 5.7e-12 75.5 120 39.2
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 6.3e-11 72.0 45 73.3
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 7.6e-09 65.1 49 57.1
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-08 63.9 53 54.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 5.0e-08 62.4 109 33.9
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 3.2e-07 59.7 44 61.4
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 7.2e-07 58.5 43 60.5
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 9.3e-07 58.2 43 60.5
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 1.6e-06 57.4 57 56.1


User provided reference genes

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