Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 0.0e+00 1121.3 546 100.0
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 1.2e-265 919.5 544 80.7
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 3.4e-263 911.4 544 80.5
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 2.2e-262 908.7 544 80.0
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 6.4e-262 907.1 543 80.3
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.4e-261 906.0 543 80.5
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.4e-261 905.2 543 80.1
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.4e-261 904.0 543 79.9
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 9.2e-261 903.3 544 80.0
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 1.6e-260 902.5 544 79.8
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 1.6e-260 902.5 544 79.0
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 2.7e-260 901.7 544 80.3
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 6.0e-260 900.6 545 80.0
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 5.1e-259 897.5 544 79.0
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 6.6e-259 897.1 544 79.4
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.9e-258 895.6 543 78.8
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 2.5e-258 895.2 546 78.8
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 4.3e-258 894.4 543 78.6
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 6.2e-257 890.6 544 77.8
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.4e-256 889.4 544 78.5
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 1.2e-255 886.3 543 77.9
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 1.2e-255 886.3 546 78.4
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 1.5e-255 885.9 548 77.6
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 1.5e-255 885.9 546 78.6
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.6e-255 885.2 546 78.4
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 3.4e-255 884.8 546 78.4
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 5.8e-255 884.0 546 78.9
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 4.9e-254 880.9 544 76.8
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 4.9e-254 880.9 545 76.7
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 4.9e-254 880.9 549 77.0
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 6.4e-254 880.6 568 75.2
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 8.4e-254 880.2 545 77.4
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.1e-253 879.8 545 77.4
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.1e-253 879.8 546 76.6
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.4e-253 878.6 546 76.6
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 2.4e-253 878.6 542 77.7
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 4.1e-253 877.9 545 77.6
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 9.2e-253 876.7 547 77.7
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 1.6e-252 875.9 544 77.2
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 2.1e-252 875.5 545 77.6
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.7e-252 875.2 552 76.4
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 3.5e-252 874.8 540 77.4
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 4.6e-252 874.4 549 76.0
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 6.0e-252 874.0 546 76.2
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 7.8e-252 873.6 545 77.1
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 7.8e-252 873.6 540 77.6
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.0e-251 873.2 545 77.2
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 1.7e-251 872.5 537 78.6
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.6e-251 870.5 546 76.0
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 8.6e-251 870.2 544 76.7
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.5e-250 868.6 544 76.7
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 4.3e-250 867.8 545 75.6
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 7.3e-250 867.1 545 75.6
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 7.3e-250 867.1 545 75.6
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 9.6e-250 866.7 545 75.6
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.2e-249 866.3 544 75.7
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 6.2e-249 864.0 545 75.2
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 1.4e-248 862.8 545 75.0
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 2.4e-248 862.1 544 75.6
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 3.1e-248 861.7 544 75.6
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 3.1e-248 861.7 542 75.8
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 3.1e-248 861.7 544 75.6
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 3.1e-248 861.7 542 75.8
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 6.8e-248 860.5 544 75.7
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 8.9e-248 860.1 544 75.6
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 8.9e-248 860.1 544 75.6
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.2e-247 859.8 549 75.8
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.5e-247 859.4 544 75.6
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.5e-247 859.4 544 75.4
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 2.0e-247 859.0 543 75.9
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.8e-246 854.7 544 74.6
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.8e-246 854.7 544 74.6
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 5.4e-245 850.9 544 75.4
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.2e-244 849.7 544 74.6
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 1.6e-244 849.4 546 74.9
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 1.6e-244 849.4 541 76.0
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 7.8e-244 847.0 554 73.5
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.0e-243 846.7 544 74.3
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 2.3e-243 845.5 549 73.8
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 6.6e-243 844.0 554 73.1
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 3.3e-242 841.6 544 75.6
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 5.6e-242 840.9 543 74.6
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.6e-241 839.3 492 81.9
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 2.1e-241 839.0 538 73.6
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 3.6e-241 838.2 544 74.4
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.8e-241 837.8 543 75.1
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 4.8e-241 837.8 544 73.9
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 1.1e-240 836.6 550 74.0
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 2.4e-240 835.5 544 75.4
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 9.0e-240 833.6 520 77.1
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.2e-239 833.2 544 73.3
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.5e-239 832.8 544 73.9
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 7.6e-239 830.5 550 73.8
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 2.9e-238 828.6 542 74.5
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 3.8e-238 828.2 550 73.5
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 1.1e-237 826.6 545 74.1
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 2.4e-237 825.5 492 81.5
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 9.3e-237 823.5 544 74.6
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 9.3e-237 823.5 544 74.1
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.2e-236 823.2 544 74.1
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 2.1e-236 822.4 544 72.8
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 7.9e-236 820.5 540 73.5
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 7.9e-236 820.5 544 73.7
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 8.7e-235 817.0 544 74.3
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 1.3e-233 813.1 554 71.5
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 4.8e-233 811.2 545 72.5
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 4.0e-232 808.1 499 77.6
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 6.9e-232 807.4 545 70.1
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.5e-231 806.2 544 72.6
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.0e-231 805.8 546 72.3
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 3.4e-231 805.1 490 79.0
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 5.8e-231 804.3 547 71.5
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 5.8e-231 804.3 546 72.2
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 4.9e-230 801.2 525 72.6
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.4e-229 799.7 544 71.0
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 3.2e-229 798.5 545 69.5
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 2.7e-228 795.4 579 68.6
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 6.7e-227 790.8 545 70.8
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.3e-225 786.6 496 75.4
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 2.1e-225 785.8 542 70.1
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 3.7e-225 785.0 542 69.9
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 6.2e-225 784.3 550 70.5
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 8.1e-225 783.9 542 69.9
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.4e-224 782.3 516 73.8
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.4e-224 782.3 499 75.8
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 5.8e-223 777.7 547 69.7
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 5.8e-223 777.7 601 65.1
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 1.3e-222 776.5 495 76.4
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 4.6e-220 768.1 544 69.1
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 1.1e-218 763.5 585 66.5
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.9e-218 762.7 544 68.6
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.9e-218 762.7 544 68.6
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.2e-215 753.4 544 68.8
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 6.5e-214 747.7 521 69.3
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.9e-213 746.1 521 69.1
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.9e-213 746.1 546 66.8
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 7.4e-210 734.2 540 66.5
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.2e-206 722.6 544 65.6
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 7.4e-202 707.6 545 65.5
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 1.7e-201 706.4 544 65.3
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.0e-195 687.2 527 67.2
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 5.5e-189 664.8 403 78.7
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 1.2e-183 647.1 410 77.1
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 1.1e-181 640.6 502 64.3
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 3.2e-181 639.0 406 75.4
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 2.6e-178 629.4 587 57.4
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 5.7e-178 628.2 506 63.8
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 5.7e-170 601.7 512 58.6
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.2e-164 583.9 472 59.1
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 2.4e-160 569.7 498 55.4
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 1.6e-148 530.4 496 53.0
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 9.2e-144 514.6 378 67.2
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 3.9e-134 482.6 317 74.4
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 3.0e-126 456.4 318 70.1
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 4.3e-125 452.6 317 69.4
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 2.1e-124 450.3 312 71.2
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 6.2e-124 448.7 291 73.9
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 4.5e-122 442.6 313 71.2
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 4.8e-108 396.0 250 73.6
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 3.1e-107 393.3 246 77.6
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.3e-83 312.8 204 72.5
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 8.6e-57 225.7 133 75.2
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 5.4e-51 206.5 454 32.6
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 7.8e-50 202.6 506 29.1
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.0e-41 174.1 146 56.8
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.6e-39 168.3 208 44.7
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 1.4e-35 155.2 109 67.0
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 4.0e-30 137.1 84 76.2
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 3.4e-21 107.5 58 84.5
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 6.4e-20 103.2 60 80.0
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.5e-18 97.4 167 42.5
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 1.2e-15 89.0 184 32.6
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.4e-12 76.3 167 36.5
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 2.1e-07 61.6 47 59.6
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 6.2e-07 60.1 37 73.0
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 6.9e-06 56.6 55 52.7


User provided reference genes

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