Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 7.7e-80 300.4 153 100.0
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 7.2e-70 267.3 153 83.0
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 2.7e-69 265.4 153 82.4
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.7e-69 265.4 153 81.0
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 7.9e-69 263.8 151 84.1
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 7.9e-69 263.8 153 82.4
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 79.1
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 80.4
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 80.4
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 8.8e-68 260.4 151 80.1
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 8.8e-68 260.4 153 81.0
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 79.7
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.5e-67 259.6 151 81.5
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 2.0e-67 259.2 153 80.4
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 2.6e-67 258.8 153 79.7
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-67 258.8 147 81.6
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-67 258.8 153 79.1
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 2.6e-67 258.8 153 79.7
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 79.7
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 4.4e-67 258.1 153 79.7
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.4e-67 258.1 153 78.4
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 79.7
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.3e-66 256.5 151 79.5
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.3e-66 256.5 152 78.3
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.2e-66 255.8 151 79.5
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 78.4
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.8e-66 255.4 151 78.8
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 4.8e-66 254.6 151 78.8
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.8e-66 254.6 155 79.4
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 79.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 80.4
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 1.4e-65 253.1 150 80.0
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.4e-65 253.1 154 78.6
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 1.4e-65 253.1 153 78.4
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.4e-65 253.1 150 77.3
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.8e-65 252.7 150 78.7
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.8e-65 252.7 153 77.1
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.8e-65 252.7 152 80.3
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.8e-65 252.7 155 78.1
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.8e-65 252.7 150 76.7
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.4e-65 252.3 151 78.1
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 79.1
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 77.1
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 78.4
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 3.1e-65 251.9 153 77.1
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 3.1e-65 251.9 151 78.8
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 3.1e-65 251.9 150 76.7
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.1e-65 251.9 145 79.3
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 5.3e-65 251.1 153 78.4
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.3e-65 251.1 150 78.0
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 7.0e-65 250.8 151 76.8
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 7.0e-65 250.8 145 80.0
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 7.0e-65 250.8 153 77.1
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 9.1e-65 250.4 153 78.4
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 9.1e-65 250.4 153 77.8
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 9.1e-65 250.4 153 79.1
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.2e-64 250.0 151 77.5
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 1.2e-64 250.0 151 77.5
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.2e-64 250.0 153 76.5
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.6e-64 249.6 150 78.7
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.6e-64 249.6 151 80.1
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.6e-64 248.8 153 79.1
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-64 248.8 153 76.5
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 3.5e-64 248.4 151 76.8
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.5e-64 248.1 153 75.8
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 5.9e-64 247.7 153 75.8
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 5.9e-64 247.7 153 76.5
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 7.7e-64 247.3 153 77.8
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 7.7e-64 247.3 153 76.5
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 7.7e-64 247.3 153 76.5
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.0e-63 246.9 151 76.8
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.0e-63 246.9 153 75.8
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.3e-63 246.5 147 76.9
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.3e-63 246.5 152 77.0
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 2.2e-63 245.7 151 76.2
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 5.0e-63 244.6 150 76.7
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 5.0e-63 244.6 153 75.2
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 73.9
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 76.5
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 1.1e-62 243.4 151 76.8
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 1.1e-62 243.4 153 72.5
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 1.1e-62 243.4 151 75.5
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.1e-62 243.4 153 72.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-62 242.7 153 75.8
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.5e-62 242.3 152 75.7
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 4.2e-62 241.5 150 74.7
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 1.2e-61 240.0 153 71.2
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 76.5
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 71.2
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 2.1e-61 239.2 153 71.9
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 2.7e-61 238.8 153 73.2
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 2.7e-61 238.8 150 75.3
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.6e-61 238.4 151 73.5
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 4.7e-61 238.0 153 73.2
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 6.1e-61 237.7 153 74.5
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.0e-60 236.9 153 73.2
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.0e-60 236.9 153 73.2
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 1.8e-60 236.1 153 71.2
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 3.0e-60 235.3 150 74.7
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 4.0e-60 235.0 151 71.5
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 4.0e-60 235.0 151 74.8
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 5.2e-60 234.6 152 70.4
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 6.7e-60 234.2 153 70.6
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 6.7e-60 234.2 153 71.2
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 8.8e-60 233.8 150 71.3
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 8.8e-60 233.8 150 70.7
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.1e-59 233.4 150 71.3
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.5e-59 233.0 149 75.8
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.5e-59 233.0 150 71.3
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 2.6e-59 232.3 153 71.2
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 7.5e-59 230.7 151 71.5
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 9.7e-59 230.3 150 70.7
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 9.7e-59 230.3 151 71.5
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 4.8e-58 228.0 151 70.2
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 8.2e-58 227.3 151 67.5
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 7.0e-57 224.2 147 73.5
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 9.1e-57 223.8 153 69.9
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 3.5e-56 221.9 168 64.3
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.5e-56 221.9 151 69.5
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.7e-55 219.5 150 72.7
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.5e-54 216.5 155 67.7
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.2e-54 214.9 155 66.5
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 4.7e-53 211.5 153 66.0
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.7e-50 203.0 142 68.3
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 3.7e-50 201.8 119 78.2
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 1.1e-49 200.3 145 61.4
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 2.4e-49 199.1 122 74.6
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 2.4e-49 199.1 153 58.2
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 7.7e-48 194.1 120 75.0
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.0e-47 193.7 153 62.7
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 5.5e-46 188.0 151 61.6
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 5.5e-46 188.0 111 77.5
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 3.6e-45 185.3 111 76.6
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 5.4e-41 171.4 153 49.7
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 9.2e-41 170.6 181 54.1
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 6.8e-36 154.5 149 51.7
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.4e-33 146.0 95 73.7
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 1.9e-30 136.3 75 81.3
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 1.6e-29 133.3 124 56.5
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 6.2e-29 131.3 144 47.2
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 8.0e-29 131.0 78 74.4
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 2.3e-28 129.4 74 83.8
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 3.1e-28 129.0 75 74.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.8e-27 124.8 100 62.0
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.7e-26 122.1 67 80.6
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.4e-26 121.3 65 83.1
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.9e-25 119.8 74 79.7
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 4.1e-25 118.6 78 78.2
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.6e-24 116.7 83 73.5
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.0e-23 114.0 89 67.4
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.3e-18 97.1 149 34.9
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.4e-12 77.0 55 78.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 5.1e-07 58.5 67 50.7


User provided reference genes

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