Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 6.1e-124 447.6 241 100.0
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 3.7e-52 209.1 244 58.6
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 4.8e-52 208.8 243 57.6
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.8e-51 206.8 229 58.1
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 2.6e-50 203.0 226 58.0
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 8.4e-49 198.0 261 50.2
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 3.2e-48 196.1 264 50.4
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 1.0e-46 191.0 257 52.5
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 3.0e-46 189.5 259 50.2
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 5.1e-46 188.7 263 52.5
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 6.7e-46 188.3 267 50.2
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 8.7e-46 188.0 253 51.0
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 1.1e-45 187.6 246 49.6
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 1.9e-45 186.8 267 49.8
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 3.3e-45 186.0 249 49.0
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 4.3e-45 185.7 264 48.5
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 5.7e-45 185.3 246 52.4
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 5.7e-45 185.3 262 48.5
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 2.8e-44 183.0 263 49.0
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 2.8e-44 183.0 266 47.7
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.7e-44 182.6 262 48.9
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 4.8e-44 182.2 264 51.5
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 4.8e-44 182.2 246 52.8
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 4.8e-44 182.2 262 48.9
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 4.8e-44 182.2 262 48.9
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 1.1e-43 181.0 246 52.4
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 1.4e-43 180.6 261 49.4
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 1.8e-43 180.3 257 49.0
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 5.3e-43 178.7 256 45.7
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 5.3e-43 178.7 245 51.0
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 1.2e-42 177.6 262 47.3
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 4.5e-42 175.6 251 50.6
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 4.5e-42 175.6 254 49.2
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 4.5e-42 175.6 263 49.8
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 1.7e-41 173.7 240 49.2
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 2.9e-41 172.9 205 54.1
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 2.9e-41 172.9 251 49.8
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 2.9e-41 172.9 264 47.0
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 3.8e-41 172.6 260 48.1
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 6.5e-41 171.8 251 48.6
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 6.5e-41 171.8 253 47.4
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 6.5e-41 171.8 250 48.4
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 8.5e-41 171.4 262 46.9
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.1e-40 171.0 248 48.0
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 1.9e-40 170.2 261 48.7
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 4.2e-40 169.1 252 46.0
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 5.5e-40 168.7 256 48.0
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 5.5e-40 168.7 257 49.0
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 1.6e-39 167.2 248 48.4
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 3.6e-39 166.0 254 47.6
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 3.6e-39 166.0 260 46.5
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 4.6e-39 165.6 259 47.5
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 1.8e-38 163.7 258 46.9
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 1.8e-38 163.7 212 50.0
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 3.0e-38 162.9 257 43.6
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 6.7e-38 161.8 257 47.9
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 2.5e-37 159.8 199 51.8
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 4.3e-37 159.1 197 52.8
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 4.3e-37 159.1 209 51.7
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 9.7e-37 157.9 260 46.9
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 1.6e-36 157.1 161 59.0
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 4.8e-36 155.6 246 43.9
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 6.3e-36 155.2 193 51.8
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 1.1e-35 154.5 201 52.7
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 6.9e-35 151.8 258 42.6
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 9.0e-35 151.4 109 77.1
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 9.0e-35 151.4 109 77.1
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 1.5e-34 150.6 136 61.8
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 1.5e-34 150.6 136 61.8
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 2.0e-34 150.2 136 61.8
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 3.4e-34 149.4 243 45.7
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 5.9e-34 148.7 269 46.5
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 1.0e-33 147.9 165 56.4
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 1.0e-33 147.9 142 59.9
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 1.0e-33 147.9 116 69.0
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 1.3e-33 147.5 232 43.1
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.3e-33 147.5 246 43.9
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 2.2e-33 146.7 181 56.9
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 3.8e-33 146.0 237 44.7
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 3.8e-33 146.0 158 55.1
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 6.5e-33 145.2 116 67.2
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 6.5e-33 145.2 116 67.2
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 6.5e-33 145.2 116 67.2
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 6.5e-33 145.2 116 67.2
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 8.5e-33 144.8 158 55.1
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 8.5e-33 144.8 251 41.0
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.1e-32 144.4 244 45.9
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 1.9e-32 143.7 154 57.1
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 2.5e-32 143.3 153 56.9
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 4.2e-32 142.5 116 67.2
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 4.2e-32 142.5 152 55.9
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 4.2e-32 142.5 146 57.5
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 2.7e-31 139.8 155 54.2
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 3.6e-31 139.4 120 65.0
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 2.3e-30 136.7 165 52.7
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 2.3e-30 136.7 243 42.0
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 7.4e-29 131.7 166 54.2
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 1.7e-28 130.6 216 44.0
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 3.1e-27 126.3 248 42.7
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 4.1e-27 125.9 140 52.1
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 3.8e-25 119.4 138 52.9
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 5.5e-24 115.5 164 47.6
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 6.1e-23 112.1 83 67.5
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 6.1e-23 112.1 225 40.9
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.8e-17 92.8 159 46.5
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 4.7e-15 85.9 179 40.8
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 3.1e-11 73.2 158 36.7
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 5.9e-10 68.9 204 36.3


User provided reference genes

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