Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 2.8e-164 582.0 328 100.0
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 3.8e-36 156.4 311 36.0
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 1.5e-35 154.5 319 37.9
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 4.2e-35 152.9 246 40.2
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 7.2e-35 152.1 318 36.5
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 4.0e-33 146.4 279 37.3
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.0e-33 146.4 268 41.0
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.8e-33 145.2 244 39.3
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.2e-32 144.8 244 38.9
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.6e-32 143.7 346 33.8
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.4e-32 143.3 364 33.2
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 5.7e-32 142.5 245 40.0
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.7e-32 142.5 241 40.2
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 7.5e-32 142.1 324 34.6
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 9.8e-32 141.7 326 35.0
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-31 140.6 250 38.4
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 4.8e-31 139.4 311 37.6
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 6.3e-31 139.0 281 35.6
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.3e-31 139.0 281 34.9
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 8.3e-31 138.7 356 32.6
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.4e-30 137.9 281 33.8
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.4e-30 137.9 281 33.8
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.4e-30 137.9 281 33.8
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.4e-30 137.9 242 38.4
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.8e-30 137.5 245 38.0
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 2.4e-30 137.1 285 37.5
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 7.0e-30 135.6 246 37.0
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 9.1e-30 135.2 364 33.0
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 9.1e-30 135.2 332 34.3
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.6e-29 134.4 246 34.6
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 3.5e-29 133.3 247 38.5
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 3.5e-29 133.3 261 34.9
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 7.7e-29 132.1 259 37.1
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.5e-28 129.0 281 33.5
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 6.5e-28 129.0 256 35.5
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 6.5e-28 129.0 256 35.5
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 6.5e-28 129.0 235 39.1
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.5e-28 128.6 256 35.2
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.1e-27 128.3 280 33.2
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-27 128.3 208 38.9
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 5.5e-27 125.9 246 36.6
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 7.2e-27 125.6 287 34.5
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.2e-26 124.8 238 37.8
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.2e-26 124.8 360 31.1
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.6e-26 123.2 232 37.5
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.6e-26 123.2 242 33.9
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 3.6e-26 123.2 238 37.8
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 6.1e-26 122.5 234 38.0
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 6.1e-26 122.5 235 38.3
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 8.0e-26 122.1 231 38.1
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 8.0e-26 122.1 244 37.7
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.8e-25 120.9 220 37.3
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.8e-25 120.9 234 36.8
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.8e-25 120.9 331 34.1
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.3e-25 120.6 335 32.5
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 4.0e-25 119.8 326 32.8
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 4.0e-25 119.8 245 41.2
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 8.8e-25 118.6 201 41.8
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 1.5e-24 117.9 231 35.9
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 2.0e-24 117.5 297 33.3
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 3.4e-24 116.7 191 40.8
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 4.4e-24 116.3 244 36.9
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 4.4e-24 116.3 236 35.2
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 4.4e-24 116.3 279 34.1
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 5.7e-24 115.9 219 40.6
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 5.7e-24 115.9 293 33.8
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 7.5e-24 115.5 209 37.3
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 7.5e-24 115.5 236 34.7
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 9.8e-24 115.2 230 38.7
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.3e-23 114.8 245 35.9
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.7e-23 114.4 276 33.7
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 2.2e-23 114.0 251 35.9
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.1e-22 111.7 268 34.3
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 1.8e-22 110.9 250 34.8
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 3.1e-22 110.2 244 34.8
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 4.1e-22 109.8 240 34.6
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 5.4e-22 109.4 303 34.0
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 5.4e-22 109.4 220 38.2
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 7.0e-22 109.0 304 30.6
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 9.2e-22 108.6 229 35.4
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 9.2e-22 108.6 260 34.2
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.6e-21 107.8 209 39.2
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 2.0e-21 107.5 282 30.1
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 2.7e-21 107.1 274 31.8
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 3.5e-21 106.7 247 32.8
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 4.5e-21 106.3 223 35.4
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 7.8e-21 105.5 203 36.0
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 1.0e-20 105.1 241 33.2
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.0e-20 105.1 289 32.9
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.3e-20 104.8 220 34.1
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 1.3e-20 104.8 232 35.3
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 1.3e-20 104.8 237 34.2
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 1.7e-20 104.4 357 32.8
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.3e-20 104.0 255 31.8
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.3e-20 104.0 221 33.5
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 3.8e-20 103.2 281 30.2
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 3.8e-20 103.2 248 35.1
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 5.0e-20 102.8 231 34.6
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 8.6e-20 102.1 165 40.0
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.1e-19 101.7 236 33.1
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.5e-19 101.3 320 32.8
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.9e-19 100.9 253 32.8
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 2.5e-19 100.5 281 29.9
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 2.5e-19 100.5 274 31.0
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 2.5e-19 100.5 290 33.1
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 9.5e-19 98.6 257 32.3
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 1.2e-18 98.2 265 33.6
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.6e-18 97.8 203 39.9
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 2.1e-18 97.4 166 40.4
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 2.8e-18 97.1 238 31.9
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.8e-18 97.1 203 38.9
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 4.7e-18 96.3 264 29.9
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 4.7e-18 96.3 240 32.1
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 6.1e-18 95.9 158 41.1
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 8.0e-18 95.5 250 30.8
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 1.0e-17 95.1 287 29.3
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.0e-17 95.1 211 37.4
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.0e-17 95.1 272 29.4
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 1.0e-17 95.1 197 38.1
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 2.3e-17 94.0 274 30.7
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 2.3e-17 94.0 231 32.9
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 3.0e-17 93.6 324 29.0
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 5.2e-17 92.8 201 34.3
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 6.8e-17 92.4 163 38.7
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 8.9e-17 92.0 229 34.9
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 2.0e-16 90.9 160 39.4
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 2.0e-16 90.9 338 31.1
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.4e-16 90.1 249 28.1
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 7.5e-16 89.0 320 30.0
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 7.5e-16 89.0 288 28.8
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 7.5e-16 89.0 269 30.1
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.9e-15 87.0 243 30.0
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 6.4e-15 85.9 376 25.5
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 3.2e-14 83.6 115 44.3
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 1.6e-13 81.3 133 43.6
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 5.9e-13 79.3 213 31.5
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.3e-12 78.2 344 26.2
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 2.3e-12 77.4 267 32.6
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 6.6e-12 75.9 114 42.1
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 2.1e-10 70.9 176 26.7
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 4.7e-10 69.7 100 45.0
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 5.8e-08 62.8 177 29.4
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 9.8e-08 62.0 258 30.6
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 2.9e-07 60.5 70 45.7
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 2.9e-07 60.5 243 28.0
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 8.3e-07 58.9 241 28.2
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 1.1e-06 58.5 240 25.8
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.1e-06 58.5 116 39.7
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 1.9e-06 57.8 296 22.6
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 4.1e-06 56.6 254 26.4
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 9.2e-06 55.5 241 26.6


User provided reference genes

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