Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 1.4e-59 232.6 111 100.0
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 9.0e-22 107.1 110 50.9
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 4.5e-21 104.8 99 54.5
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 2.5e-19 99.0 111 48.6
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 5.5e-19 97.8 106 53.8
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 5.5e-19 97.8 93 60.2
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 1.6e-18 96.3 110 49.1
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.5e-18 95.1 108 50.0
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 3.5e-18 95.1 116 46.6
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.6e-18 94.7 117 44.4
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.6e-18 94.7 107 48.6
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.6e-18 94.7 107 48.6
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.3e-17 92.4 116 50.0
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 6.7e-17 90.9 117 47.9
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 1.9e-16 89.4 120 46.7
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 9.7e-16 87.0 73 60.3
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 1.3e-15 86.7 92 53.3
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.6e-15 86.3 89 55.1
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 1.6e-15 86.3 73 61.6
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 1.6e-15 86.3 73 57.5
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 2.8e-15 85.5 118 41.5
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 2.8e-15 85.5 112 48.2
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 3.7e-15 85.1 97 49.5
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 4.8e-15 84.7 76 56.6
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 8.2e-15 84.0 115 45.2
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 1.4e-14 83.2 68 63.2
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 1.8e-14 82.8 117 47.9
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 2.4e-14 82.4 103 48.5
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 3.1e-14 82.0 97 47.4
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 3.1e-14 82.0 110 46.4
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 3.1e-14 82.0 114 45.6
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 5.3e-14 81.3 105 46.7
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.0e-13 79.3 75 50.7
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 2.0e-13 79.3 110 45.5
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 3.4e-13 78.6 98 46.9
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 4.5e-13 78.2 71 54.9
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 5.9e-13 77.8 109 40.4
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 5.9e-13 77.8 115 41.7
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 1.3e-12 76.6 117 42.7
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.3e-12 76.6 105 44.8
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 1.7e-12 76.3 105 44.8
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 1.7e-12 76.3 105 44.8
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 3.8e-12 75.1 72 56.9
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 3.8e-12 75.1 78 53.8
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 5.0e-12 74.7 102 45.1
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 5.0e-12 74.7 73 54.8
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 6.5e-12 74.3 108 41.7
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 6.5e-12 74.3 101 45.5
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 6.5e-12 74.3 76 48.7
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 6.5e-12 74.3 102 42.2
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 6.5e-12 74.3 117 44.4
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 8.5e-12 73.9 88 50.0
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 8.5e-12 73.9 92 45.7
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 8.5e-12 73.9 72 52.8
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 1.1e-11 73.6 115 43.5
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 1.1e-11 73.6 106 43.4
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 1.4e-11 73.2 65 58.5
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 1.4e-11 73.2 77 53.2
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.4e-11 73.2 77 53.2
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 1.4e-11 73.2 65 63.1
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.4e-11 73.2 69 56.5
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.4e-11 73.2 76 47.4
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 1.4e-11 73.2 75 56.0
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 1.4e-11 73.2 65 60.0
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.9e-11 72.8 113 42.5
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 1.9e-11 72.8 104 44.2
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.9e-11 72.8 65 60.0
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 2.5e-11 72.4 66 56.1
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 2.5e-11 72.4 112 44.6
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 3.2e-11 72.0 67 55.2
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 4.2e-11 71.6 68 54.4
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 4.2e-11 71.6 69 58.0
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 4.2e-11 71.6 117 42.7
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 4.2e-11 71.6 76 46.1
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 4.2e-11 71.6 76 47.4
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 5.5e-11 71.2 108 43.5
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 5.5e-11 71.2 71 49.3
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 1.2e-10 70.1 79 48.1
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 1.6e-10 69.7 76 46.1
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.6e-10 69.7 72 50.0
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 1.6e-10 69.7 73 47.9
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.7e-10 68.9 68 54.4
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.7e-10 68.9 100 43.0
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 4.6e-10 68.2 77 50.6
arahy.Tifrunner.gnm1.ann1.YJAD7Q Arachis hypogaea HOM05D003277 ORTHO05D003275 4.6e-10 68.2 100 42.0
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 4.6e-10 68.2 72 51.4
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 4.6e-10 68.2 66 53.0
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 6.1e-10 67.8 69 53.6
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 6.1e-10 67.8 77 50.6
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 7.9e-10 67.4 66 57.6
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.0e-09 67.0 116 40.5
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 1.4e-09 66.6 113 37.2
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 1.4e-09 66.6 72 48.6
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 1.8e-09 66.2 75 52.0
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 1.8e-09 66.2 79 45.6
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 2.3e-09 65.9 74 51.4
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.3e-09 65.9 73 46.6
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.9e-09 65.1 81 45.7
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.1e-09 64.7 70 48.6
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 5.1e-09 64.7 73 46.6
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 5.1e-09 64.7 71 46.5
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 5.1e-09 64.7 70 52.9
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 5.1e-09 64.7 110 40.0
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 5.1e-09 64.7 107 41.1
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 5.1e-09 64.7 69 53.6
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 6.7e-09 64.3 74 51.4
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 8.8e-09 63.9 107 40.2
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 8.8e-09 63.9 110 40.9
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 8.8e-09 63.9 52 67.3
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.1e-08 63.5 99 42.4
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.1e-08 63.5 99 43.4
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-08 63.5 72 54.2
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.5e-08 63.2 77 49.4
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.5e-08 63.2 72 52.8
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.9e-08 62.8 81 44.4
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 1.9e-08 62.8 72 45.8
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 1.9e-08 62.8 65 50.8
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 1.9e-08 62.8 73 47.9
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 2.5e-08 62.4 63 58.7
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.3e-08 62.0 76 48.7
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 4.3e-08 61.6 72 51.4
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 4.3e-08 61.6 73 49.3
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.3e-08 61.6 73 49.3
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.3e-08 61.6 73 49.3
Sed0022793 Sechium edule HOM05D023703 ORTHO05D025099 4.3e-08 61.6 96 37.5
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.4e-08 60.8 81 43.2
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.4e-08 60.8 70 50.0
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.4e-08 60.8 70 50.0
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 7.4e-08 60.8 96 40.6
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 9.7e-08 60.5 73 49.3
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.7e-08 60.5 67 55.2
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 9.7e-08 60.5 69 49.3
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 9.7e-08 60.5 94 40.4
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 9.7e-08 60.5 70 50.0
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 1.3e-07 60.1 107 33.6
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.7e-07 59.7 70 48.6
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 1.7e-07 59.7 70 51.4
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 2.2e-07 59.3 74 47.3
Lalb_Chr04g0262701 Lupinus albus HOM05D003277 ORTHO05D003275 2.2e-07 59.3 108 36.1
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.2e-07 59.3 107 37.4
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.8e-07 58.9 81 45.7
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 2.8e-07 58.9 69 53.6
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 2.8e-07 58.9 72 47.2
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 3.7e-07 58.5 75 45.3
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.8e-07 58.2 76 44.7
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.8e-07 58.2 76 44.7
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.8e-07 58.2 76 44.7
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 4.8e-07 58.2 68 51.5
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 6.3e-07 57.8 72 47.2
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 6.3e-07 57.8 73 43.8
Sc21g0005130 Simmondsia chinensis HOM05D003277 ORTHO05D003275 6.3e-07 57.8 72 47.2
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 6.3e-07 57.8 71 46.5
EL10Ac8g18510 Beta vulgaris HOM05D003277 ORTHO05D003275 8.2e-07 57.4 65 53.8
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 8.2e-07 57.4 75 48.0
Lalb_Chr04g0262721 Lupinus albus HOM05D003277 ORTHO05D003275 1.1e-06 57.0 114 37.7
HPP92_008676 Vanilla planifolia HOM05D003277 ORTHO05D003275 1.1e-06 57.0 65 46.2
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.4e-06 56.6 68 51.5
Thhalv10000375m.g Eutrema salsugineum HOM05D012534 ORTHO05D003275 1.8e-06 56.2 72 48.6
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.8e-06 56.2 67 52.2
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.8e-06 56.2 67 52.2
Medtr4g012350 Medicago truncatula HOM05D003277 ORTHO05D003275 1.8e-06 56.2 111 41.4
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.8e-06 56.2 68 51.5
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 2.4e-06 55.8 63 46.0
TPR.G39760 Trifolium pratense HOM05D003277 ORTHO05D003275 2.4e-06 55.8 123 41.5
ATR1120G074 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.1e-06 55.5 81 43.2
Carub.0003s1575 Capsella rubella HOM05D015723 ORTHO05D003275 3.1e-06 55.5 112 34.8
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 3.1e-06 55.5 70 48.6
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 3.1e-06 55.5 66 48.5
HPP92_008689 Vanilla planifolia HOM05D003277 ORTHO05D003275 3.1e-06 55.5 65 44.6
CANSAT56G3518 Cannabis sativa HOM05D003277 ORTHO05D003275 4.1e-06 55.1 80 46.2
Carub.0005s0152 Capsella rubella HOM05D012534 ORTHO05D003275 4.1e-06 55.1 56 55.4
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 4.1e-06 55.1 69 44.9
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 4.1e-06 55.1 69 46.4
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 5.3e-06 54.7 65 52.3
Lsat_1_v5_gn_8_93781 Lactuca sativa HOM05D000750 ORTHO05D000714 6.9e-06 54.3 67 47.8
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 6.9e-06 54.3 66 50.0
arahy.Tifrunner.gnm1.ann1.RIWW0V Arachis hypogaea HOM05D003277 ORTHO05D003275 9.1e-06 53.9 124 36.3
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 9.1e-06 53.9 75 42.7


User provided reference genes

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