Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 0.0e+00 1450.6 719 100.0
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.4e-301 1039.3 673 80.7
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 4.0e-264 914.8 721 63.5
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.5e-263 912.9 684 64.2
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.9e-261 906.0 681 64.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 3.9e-259 898.3 733 61.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 6.2e-257 891.0 679 64.2
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.6e-255 884.0 684 62.4
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 3.8e-254 881.7 711 61.2
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.3e-251 873.2 735 60.1
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.3e-251 872.5 694 61.4
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.0e-251 872.1 745 59.5
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.7e-251 870.9 696 60.6
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.2e-249 864.4 688 61.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 6.2e-249 864.4 679 61.1
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.9e-248 860.9 725 58.5
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.8e-246 855.1 680 60.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 8.4e-246 854.0 678 60.0
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.9e-245 852.8 751 57.8
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 7.1e-245 850.9 711 59.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.7e-244 849.0 670 61.8
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 4.6e-244 848.2 663 62.3
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.0e-243 847.0 681 61.8
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.0e-243 845.5 669 61.4
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.9e-243 845.1 683 60.9
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.1e-242 843.6 665 60.3
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 3.3e-242 842.0 677 60.1
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 5.7e-242 841.3 677 60.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 5.7e-242 841.3 666 61.4
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 7.4e-242 840.9 677 60.3
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 7.4e-242 840.9 677 60.4
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 8.2e-241 837.4 682 59.5
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.4e-240 836.6 720 58.3
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 5.3e-240 834.7 726 59.0
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.9e-240 834.3 676 58.7
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 9.0e-240 833.9 677 61.0
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.6e-239 832.4 724 57.6
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.6e-239 832.4 675 60.4
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.0e-238 830.5 674 61.0
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.2e-238 829.3 731 57.3
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.2e-238 829.3 701 59.5
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.8e-238 828.6 680 60.1
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 3.8e-238 828.6 727 58.0
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.0e-238 828.2 675 60.1
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 6.5e-238 827.8 706 57.8
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.1e-237 827.0 677 59.7
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.9e-237 826.2 729 55.3
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 4.2e-237 825.1 715 56.5
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 5.5e-237 824.7 680 58.4
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.2e-236 823.5 675 59.9
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.2e-236 823.5 682 59.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.1e-236 822.8 681 60.5
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 5.1e-235 818.1 667 60.3
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.5e-234 815.8 672 59.8
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 4.8e-233 811.6 719 56.2
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 6.3e-233 811.2 680 58.4
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 8.2e-233 810.8 676 58.6
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.1e-232 808.9 668 59.0
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 4.1e-232 808.5 714 55.7
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.3e-232 808.1 680 58.4
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.5e-231 806.6 726 57.6
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.5e-231 806.6 668 59.3
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.4e-231 805.4 665 59.2
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.2e-230 802.7 671 58.3
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.1e-229 800.4 680 57.2
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.4e-229 800.0 668 58.2
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.2e-228 797.0 667 58.6
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-228 797.0 694 56.8
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.5e-226 790.0 690 58.0
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 4.4e-226 788.5 694 56.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.4e-224 783.5 681 56.2
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.8e-224 783.1 672 56.2
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.1e-224 782.3 682 56.6
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.7e-222 776.5 721 53.8
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.2e-222 776.2 598 61.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 3.8e-222 775.4 681 55.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.1e-221 773.9 680 56.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.9e-221 773.1 676 55.3
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.1e-220 769.6 663 57.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.1e-220 769.6 669 55.0
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.0e-219 767.3 611 61.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.8e-219 766.5 671 55.1
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 5.2e-219 765.0 679 56.3
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.8e-217 759.2 677 54.1
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 6.3e-217 758.1 845 48.3
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 8.2e-217 757.7 670 55.5
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.4e-216 756.9 668 55.2
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.4e-216 756.1 616 59.3
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.0e-216 754.6 684 53.9
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 7.0e-216 754.6 681 53.5
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 9.1e-216 754.2 671 54.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 5.9e-215 751.5 660 58.2
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-214 749.6 677 53.6
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.2e-214 749.6 677 53.6
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 9.4e-213 744.2 677 53.5
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.2e-212 743.8 690 52.6
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.8e-211 740.0 675 54.1
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.0e-211 739.2 673 53.9
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.8e-211 737.6 723 51.3
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.4e-210 735.7 660 57.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.3e-209 733.8 720 51.9
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.8e-209 732.6 682 54.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.8e-209 731.9 677 53.3
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.3e-209 731.5 721 50.6
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.4e-208 730.3 589 60.6
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-208 729.2 679 53.6
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.3e-208 728.4 682 53.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.0e-207 726.5 669 53.5
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 7.7e-207 724.5 688 52.2
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.2e-206 723.0 682 53.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-205 720.3 659 56.8
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.9e-205 719.9 585 59.8
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.7e-204 715.3 675 51.9
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 8.8e-203 711.1 707 50.5
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.4e-200 703.0 686 53.1
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.8e-198 695.7 723 49.8
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.4e-194 682.6 680 51.6
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.7e-193 680.2 723 47.0
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-192 677.6 768 47.7
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.1e-192 677.6 676 50.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 5.9e-191 671.8 715 49.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.1e-188 663.3 674 52.7
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 3.4e-186 656.0 526 61.6
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.3e-185 654.1 637 52.3
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.4e-184 648.7 689 48.9
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.2e-178 630.9 687 47.0
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.6e-172 609.4 553 55.9
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 9.9e-170 601.3 669 47.7
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.7e-167 593.2 677 47.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 8.1e-164 581.6 525 54.9
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 4.6e-159 565.8 678 45.9
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 4.3e-141 506.1 541 47.7
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.1e-123 448.4 427 50.4
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-121 441.8 336 60.7
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 2.9e-121 440.3 389 55.0
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 4.8e-108 396.4 306 60.5
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 6.1e-103 379.4 461 45.3
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 5.7e-101 372.9 397 47.9
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 4.8e-100 369.8 214 78.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.1e-99 368.6 387 51.2
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 2.6e-93 347.4 476 41.2
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 4.4e-85 320.1 562 35.4
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 6.3e-84 316.2 541 35.5
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 4.7e-79 300.1 565 33.3
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.3e-76 292.0 311 44.1
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 2.1e-71 274.6 315 47.3
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 9.8e-61 239.2 156 70.5
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 9.2e-51 206.1 169 56.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.7e-50 204.5 141 64.5
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 6.6e-49 199.9 241 45.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.6e-45 186.4 219 45.2
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.4e-44 183.0 378 33.1
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.4e-43 182.2 127 63.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.7e-41 175.3 128 62.5
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-38 165.6 225 40.9
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.1e-35 156.0 175 45.7
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 3.2e-35 154.5 197 43.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.1e-31 141.7 246 36.2
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.1e-30 137.9 253 34.0
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 5.3e-30 137.1 163 44.2
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 9.9e-29 132.9 99 61.6
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 9.9e-29 132.9 99 61.6
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 9.9e-29 132.9 99 61.6
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 8.7e-25 119.8 279 32.6
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.4e-20 103.2 74 68.9
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 1.6e-18 99.0 144 35.4
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.8e-17 95.5 233 31.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.9e-17 94.4 183 35.5
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.7e-15 87.8 114 39.5
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.4e-14 85.9 59 64.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.6e-10 70.9 47 66.0
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.6e-10 70.9 47 66.0
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.5e-08 65.1 52 57.7


User provided reference genes

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