Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0245 Cannabis sativa HOM05D006891 ORTHO05D008671 1.1e-144 516.9 316 100.0
CANSAT56G1732 Cannabis sativa HOM05D006891 ORTHO05D008671 1.1e-144 516.9 316 100.0
TAR475G0005 Trochodendron aralioides HOM05D006891 ORTHO05D008671 5.2e-115 418.3 332 68.4
Actinidia18305 Actinidia chinensis HOM05D006891 ORTHO05D008671 1.2e-114 417.2 324 67.9
QL10p000565 Quercus lobata HOM05D006891 ORTHO05D008671 9.8e-114 414.1 328 68.0
COL.COLO4_37249 Corchorus olitorius HOM05D006891 ORTHO05D008671 2.2e-113 412.9 237 86.9
Gorai.001G054400 Gossypium raimondii HOM05D006891 ORTHO05D008671 2.2e-113 412.9 237 86.9
MELO3C026160.2 Cucumis melo HOM05D006891 ORTHO05D008671 2.9e-113 412.5 231 87.4
Dinv13725 Davidia involucrata HOM05D006891 ORTHO05D008671 2.9e-113 412.5 329 67.5
Cfa018711 Carpinus fangiana HOM05D006891 ORTHO05D008671 3.7e-113 412.1 325 68.0
Atru.chr6.1910 Acer truncatum HOM05D006891 ORTHO05D008671 8.3e-113 411.0 237 86.5
DCAR_025652 Daucus carota HOM05D006891 ORTHO05D008671 8.3e-113 411.0 239 84.9
Prupe.5G142500 Prunus persica HOM05D006891 ORTHO05D008671 1.1e-112 410.6 326 67.5
Ciclev10032123m.g Citrus clementina HOM05D006891 ORTHO05D008671 1.4e-112 410.2 237 86.9
Gohir.D07G051300 Gossypium hirsutum HOM05D006891 ORTHO05D008671 1.4e-112 410.2 237 86.1
Haze_07102 Corylus avellana HOM05D006891 ORTHO05D008671 1.9e-112 409.8 325 67.4
Nn3g16285 Nelumbo nucifera HOM05D006891 ORTHO05D008671 1.9e-112 409.8 239 85.4
Gohir.A07G047000 Gossypium hirsutum HOM05D006891 ORTHO05D008671 2.4e-112 409.5 237 86.1
Cpa.g.sc13.164 Carica papaya HOM05D006891 ORTHO05D008671 3.2e-112 409.1 237 86.5
SGA_v2.0_scaffold40G15677 Striga asiatica HOM05D006891 ORTHO05D008671 7.0e-112 407.9 237 85.2
CsaV3_1G000080 Cucumis sativus L. HOM05D006891 ORTHO05D008671 9.2e-112 407.5 231 86.1
Thhalv10025780m.g Eutrema salsugineum HOM05D006891 ORTHO05D008671 9.2e-112 407.5 231 84.4
Manes.06G126400 Manihot esculenta HOM05D006891 ORTHO05D008671 1.6e-111 406.8 323 71.8
CSS0004907 Camellia sinensis var. sinensis HOM05D006891 ORTHO05D008671 2.0e-111 406.4 324 67.0
ClCG06G018350 Citrullus lanatus HOM05D006891 ORTHO05D008671 2.0e-111 406.4 231 85.7
Sed0026594 Sechium edule HOM05D006891 ORTHO05D008671 2.0e-111 406.4 235 86.0
PGR142G3013 Punica granatum HOM05D006891 ORTHO05D008671 3.5e-111 405.6 239 84.5
Lj4g0024376 Lotus japonicus HOM05D006891 ORTHO05D008671 4.6e-111 405.2 235 84.7
MSTRG.4642 Avicennia marina HOM05D006891 ORTHO05D008671 6.0e-111 404.8 239 83.7
TWI39G1149 Tripterygium wilfordii HOM05D006891 ORTHO05D008671 6.0e-111 404.8 239 84.1
Aa31LG7G10590 Aethionema arabicum HOM05D006891 ORTHO05D008671 7.8e-111 404.4 231 84.8
Duzib205G0665 Durio zibethinus HOM05D006891 ORTHO05D008671 1.0e-110 404.1 237 84.4
Thecc.03G139800 Theobroma cacao HOM05D006891 ORTHO05D008671 1.3e-110 403.7 237 84.0
CiPaw.12G001000 Carya illinoinensis HOM05D006891 ORTHO05D008671 1.7e-110 403.3 328 67.1
MD14G1147900 Malus domestica HOM05D006891 ORTHO05D008671 1.7e-110 403.3 322 66.5
Nitab4.5_0000976g0010 Nicotiana tabacum HOM05D006891 ORTHO05D008671 3.9e-110 402.1 239 82.4
Sp7g23060 Schrenkiella parvula HOM05D006891 ORTHO05D008671 3.9e-110 402.1 231 83.5
CARHR232470 Cardamine hirsuta HOM05D006891 ORTHO05D008671 6.6e-110 401.4 231 84.4
Glyma.08G007900 Glycine max HOM05D006891 ORTHO05D008671 6.6e-110 401.4 237 84.0
MBI04_g35563_MAGBIO Magnolia biondii HOM05D006891 ORTHO05D008671 6.6e-110 401.4 231 84.0
Rhsim08G0196800 Rhododendron simsii HOM05D006891 ORTHO05D008671 6.6e-110 401.4 328 65.9
VMungo0251G3529 Vigna mungo HOM05D006891 ORTHO05D008671 8.6e-110 401.0 237 83.1
C07p53960 Brassica napus HOM05D006891 ORTHO05D008671 1.1e-109 400.6 231 83.5
Migut.D01186 Erythranthe guttata HOM05D006891 ORTHO05D008671 1.5e-109 400.2 239 82.8
vmacro19179 Vaccinium macrocarpon HOM05D006891 ORTHO05D008671 3.3e-109 399.1 239 82.8
BraA03t14640Z Brassica rapa HOM05D006891 ORTHO05D008671 4.3e-109 398.7 231 83.1
Carub.0007s1596 Capsella rubella HOM05D006891 ORTHO05D008671 4.3e-109 398.7 231 83.5
CAN.G843.14 Capsicum annuum HOM05D006891 ORTHO05D008671 4.3e-109 398.7 239 82.0
FAN18G0906 Fragaria x ananassa HOM05D006891 ORTHO05D008671 4.3e-109 398.7 235 82.6
Glyma.05G200500 Glycine max HOM05D006891 ORTHO05D008671 4.3e-109 398.7 237 84.0
Solyc03g118240.4 Solanum lycopersicum HOM05D006891 ORTHO05D008671 4.3e-109 398.7 239 82.4
PGSC0003DMG400014243 Solanum tuberosum HOM05D006891 ORTHO05D008671 4.3e-109 398.7 239 82.4
AT4G25080 Arabidopsis thaliana HOM05D006891 ORTHO05D008671 5.6e-109 398.3 231 84.0
FvH4_5g09430 Fragaria vesca HOM05D006891 ORTHO05D008671 5.6e-109 398.3 320 66.6
Sopen03g037150 Solanum pennellii HOM05D006891 ORTHO05D008671 7.3e-109 397.9 239 82.0
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 9.5e-109 397.5 319 66.1
Lalb_Chr13g0296991 Lupinus albus HOM05D006891 ORTHO05D008671 9.5e-109 397.5 239 82.4
AL7G28070 Arabidopsis lyrata HOM05D006891 ORTHO05D008671 1.2e-108 397.1 231 83.1
BcaNung03997 Brassica carinata HOM05D006891 ORTHO05D008671 1.2e-108 397.1 231 82.3
A03p55730 Brassica napus HOM05D006891 ORTHO05D008671 1.2e-108 397.1 231 83.1
FAN04G1325 Fragaria x ananassa HOM05D006891 ORTHO05D008671 1.2e-108 397.1 320 66.6
Aqoxy5G03144 Aquilegia oxysepala HOM05D006891 ORTHO05D008671 3.6e-108 395.6 317 65.9
Lsat_1_v5_gn_4_84561 Lactuca sativa HOM05D006891 ORTHO05D008671 4.7e-108 395.2 234 82.9
Phvul.002G281900 Phaseolus vulgaris HOM05D006891 ORTHO05D008671 4.7e-108 395.2 237 81.0
BcaC09g50812 Brassica carinata HOM05D006891 ORTHO05D008671 6.2e-108 394.8 231 81.8
MD06G1131500 Malus domestica HOM05D006891 ORTHO05D008671 6.2e-108 394.8 322 65.2
RcHm_v2.0_Chr7g0188761 Rosa chinensis HOM05D006891 ORTHO05D008671 6.2e-108 394.8 320 66.2
A01p16330 Brassica napus HOM05D006891 ORTHO05D008671 8.0e-108 394.4 231 81.8
BraA01t01588Z Brassica rapa HOM05D006891 ORTHO05D008671 1.1e-107 394.0 231 81.8
Hund02505 Selenicereus undatus HOM05D006891 ORTHO05D008671 1.1e-107 394.0 233 84.5
arahy.Tifrunner.gnm1.ann1.5G0V08 Arachis hypogaea HOM05D006891 ORTHO05D008671 1.4e-107 393.7 235 83.0
C01p20480 Brassica napus HOM05D006891 ORTHO05D008671 1.8e-107 393.3 231 81.4
BolC1t01979H Brassica oleracea HOM05D006891 ORTHO05D008671 1.8e-107 393.3 231 81.4
THA.LOC104811559 Tarenaya hassleriana HOM05D006891 ORTHO05D008671 1.8e-107 393.3 224 84.8
Eucgr.G02043 Eucalyptus grandis HOM05D006891 ORTHO05D008671 5.2e-107 391.7 330 64.2
Potri.012G106600 Populus trichocarpa HOM05D006891 ORTHO05D008671 6.8e-107 391.3 230 84.8
Peaxi162Scf00314g00625 Petunia axillaris HOM05D006891 ORTHO05D008671 8.9e-107 391.0 232 82.8
Lj9C486T5 Lonicera japonica HOM05D006891 ORTHO05D008671 1.2e-106 390.6 238 81.5
Sabra12G0078900 Salix brachista HOM05D006891 ORTHO05D008671 2.0e-106 389.8 258 77.1
Sc04g0000210 Simmondsia chinensis HOM05D006891 ORTHO05D008671 2.0e-106 389.8 237 81.4
ECA232G2217 Erigeron canadensis HOM05D006891 ORTHO05D008671 5.8e-106 388.3 319 69.6
BolC7t45886H Brassica oleracea HOM05D006891 ORTHO05D008671 1.3e-105 387.1 231 81.8
AUR62009532 Chenopodium quinoa HOM05D006891 ORTHO05D008671 3.7e-105 385.6 239 81.2
PSO017G2699 Papaver somniferum HOM05D006891 ORTHO05D008671 6.4e-105 384.8 240 78.3
AUR62041695 Chenopodium quinoa HOM05D006891 ORTHO05D008671 1.1e-104 384.0 239 80.8
PSO478G3300 Papaver somniferum HOM05D006891 ORTHO05D008671 1.9e-104 383.3 240 78.3
CDE11G0769 Ceratophyllum demersum HOM05D006891 ORTHO05D008671 2.4e-104 382.9 234 79.5
HanXRQChr09g0273851 Helianthus annuus HOM05D006891 ORTHO05D008671 4.1e-104 382.1 231 80.5
HanXRQChr11g0350211 Helianthus annuus HOM05D006891 ORTHO05D008671 4.1e-104 382.1 231 80.5
Medtr8g100120 Medicago truncatula HOM05D006891 ORTHO05D008671 2.7e-103 379.4 230 81.7
ATR0579G076 Amborella trichopoda HOM05D006891 ORTHO05D008671 6.6e-102 374.8 229 77.7
Psat7g039320 Pisum sativum HOM05D006891 ORTHO05D008671 1.5e-101 373.6 220 81.4
TPR.G12963 Trifolium pratense HOM05D006891 ORTHO05D008671 1.2e-100 370.5 223 80.7
arahy.Tifrunner.gnm1.ann1.0QZ944 Arachis hypogaea HOM05D006891 ORTHO05D008671 1.7e-97 360.1 219 81.7
HPP92_020658 Vanilla planifolia HOM05D006891 ORTHO05D008671 5.4e-96 355.1 234 73.9
unitig_736.g22830 Utricularia gibba HOM05D002810 ORTHO05D003983 1.2e-95 354.0 239 74.9
Ah.11g046860 Amaranthus hybridus HOM05D006891 ORTHO05D008671 3.5e-95 352.4 207 85.0
GSVIVG01008643001 Vitis vinifera HOM05D006891 ORTHO05D008671 1.9e-93 346.7 239 75.3
SalBow1G6359 Salvia bowleyana HOM05D006891 ORTHO05D008671 7.3e-93 344.7 232 75.4
SEGI_33809 Sequoiadendron giganteum HOM05D006891 ORTHO05D008671 1.2e-90 337.4 234 71.4
SMO115G0098 Selaginella moellendorffii HOM05D006891 ORTHO05D008671 4.6e-87 325.5 230 69.1
AagrBONN_evm.TU.Sc2ySwM_368.2875 Anthoceros agrestis HOM05D006891 ORTHO05D008671 1.5e-85 320.5 235 66.8
Pp3c12_24890 Physcomitrium patens HOM05D006891 ORTHO05D008671 7.3e-85 318.2 236 67.4
Mapoly0112s0034 Marchantia polymorpha HOM05D006891 ORTHO05D008671 4.8e-84 315.5 232 65.9
Zm00001eb269720 Zea mays HOM05D006891 ORTHO05D008671 5.8e-82 308.5 231 66.7
EL10Ac5g11293 Beta vulgaris HOM05D006891 ORTHO05D008671 9.9e-82 307.8 229 68.6
Cre12.g498550 Chlamydomonas reinhardtii HOM05D006891 ORTHO05D008671 1.3e-78 297.4 230 61.3
MCO11G158 Micromonas commoda HOM05D006891 ORTHO05D008671 7.1e-72 275.0 235 59.1
AUR62044303 Chenopodium quinoa HOM05D006891 ORTHO05D008671 3.3e-61 239.6 225 57.8
Potri.015G105702 Populus trichocarpa HOM05D006891 ORTHO05D008671 1.1e-59 234.6 233 57.1
Ca_16812_v3 Cicer arietinum L. HOM05D006891 ORTHO05D008671 4.6e-55 219.2 140 80.7
unitig_899.g14822 Utricularia gibba HOM05D002810 ORTHO05D003983 1.0e-54 218.0 218 56.4
Hma1.2p1_0577F.1_g182340 Hydrangea macrophylla HOM05D006891 ORTHO05D008671 2.8e-44 183.3 103 87.4
Dinv23219 Davidia involucrata HOM05D006891 ORTHO05D008671 1.8e-38 164.1 97 82.5
Os06g0132400 Oryza sativa ssp. japonica HOM05D006891 ORTHO05D008671 2.3e-38 163.7 104 69.2
SGA_v2.0_scaffold377G50317 Striga asiatica HOM05D006891 ORTHO05D008671 4.2e-16 89.7 50 80.0
BraA03t14643Z Brassica rapa HOM05D006891 ORTHO05D033303 3.8e-09 66.6 64 60.9
Eucgr.G02044 Eucalyptus grandis HOM05D006891 ORTHO05D008671 6.6e-09 65.9 53 66.0
CBR_g32078 Chara braunii HOM05D006891 ORTHO05D008671 1.9e-08 64.3 36 75.0


User provided reference genes

Program Settings