Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 9.4e-170 600.1 308 100.0
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.2e-143 513.5 309 83.2
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.7e-142 509.6 309 81.6
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.7e-142 508.4 309 81.2
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 3.2e-141 505.4 309 80.9
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 5.4e-141 504.6 309 81.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.6e-140 503.1 309 81.2
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 7.8e-140 500.7 308 80.8
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.0e-139 498.0 309 80.6
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.6e-139 497.7 309 79.9
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 3.6e-137 491.9 309 78.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 4.7e-137 491.5 307 80.8
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.1e-136 490.3 309 78.0
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 8.9e-136 487.3 309 78.3
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.6e-135 485.7 309 79.0
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.7e-134 481.9 309 77.3
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 2.0e-132 476.1 309 74.8
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 3.0e-131 472.2 308 76.3
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 3.0e-131 472.2 304 76.3
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.6e-131 471.1 309 75.7
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.9e-130 469.5 297 77.4
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 2.5e-130 469.2 310 74.2
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 3.3e-130 468.8 303 75.9
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 4.3e-130 468.4 297 77.1
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 5.6e-130 468.0 296 78.7
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 2.8e-129 465.7 308 74.7
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.7e-129 464.9 293 76.8
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-128 463.4 303 75.6
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.4e-128 463.4 303 75.6
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.8e-128 463.0 309 74.4
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.3e-128 462.6 293 76.5
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.1e-128 462.2 293 76.5
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 4.0e-128 461.8 310 74.2
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 4.0e-128 461.8 312 73.7
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.2e-127 460.3 307 73.6
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.0e-127 459.5 314 74.5
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.6e-127 459.1 308 73.7
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 7.5e-127 457.6 295 75.9
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.3e-126 456.8 306 75.2
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.7e-126 456.4 308 74.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.7e-126 456.4 303 74.3
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.9e-126 455.7 305 72.5
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.9e-126 454.9 312 75.0
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 4.9e-126 454.9 312 74.4
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 8.3e-126 454.1 308 74.4
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.9e-125 453.0 309 73.1
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 7.1e-125 451.1 310 71.3
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.2e-124 450.3 301 74.1
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.6e-124 449.9 297 74.7
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.7e-124 449.1 302 72.8
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.7e-124 449.1 313 71.9
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 4.6e-124 448.4 286 75.9
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 6.0e-124 448.0 354 66.1
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 6.0e-124 448.0 303 72.9
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.0e-123 447.2 314 72.6
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.0e-123 447.2 313 71.9
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.0e-123 447.2 311 71.1
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.3e-123 446.8 299 72.6
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.9e-123 445.3 302 72.8
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 6.6e-123 444.5 297 74.1
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.5e-122 443.4 302 71.5
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.5e-122 443.4 309 72.2
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.5e-122 442.6 312 70.8
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 4.3e-122 441.8 305 69.8
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 9.5e-122 440.7 309 71.8
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.2e-121 440.3 294 71.8
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.6e-121 439.9 308 71.8
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 4.7e-121 438.3 308 71.1
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 6.2e-121 438.0 346 64.2
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 8.1e-121 437.6 306 71.6
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-120 436.8 306 71.2
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-120 436.8 312 71.2
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.4e-120 436.8 308 71.4
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.4e-120 436.0 298 72.5
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 2.4e-120 436.0 286 73.4
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 3.1e-120 435.6 344 66.6
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 6.8e-120 434.5 308 70.8
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-119 433.7 313 70.6
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.2e-119 433.7 309 67.6
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 2.0e-119 433.0 296 73.6
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 2.0e-119 433.0 309 71.2
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 2.6e-119 432.6 312 70.2
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 3.4e-119 432.2 313 69.6
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 5.8e-119 431.4 380 60.0
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.8e-118 428.7 269 76.2
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.8e-118 428.7 309 70.2
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 4.9e-118 428.3 305 69.5
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 6.4e-118 427.9 297 70.7
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 5.4e-117 424.9 309 69.3
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.1e-117 424.5 257 80.5
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.6e-116 423.3 305 68.9
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 2.1e-116 422.9 339 65.8
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.7e-116 422.5 309 68.3
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 4.6e-116 421.8 309 68.9
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 4.6e-116 421.8 297 71.4
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 6.0e-116 421.4 309 68.3
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.0e-115 420.6 306 70.3
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.3e-115 420.2 310 68.4
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 5.1e-115 418.3 313 68.4
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.1e-115 418.3 274 75.9
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 5.1e-115 418.3 314 67.5
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 6.6e-115 417.9 309 68.0
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 8.7e-115 417.5 309 67.3
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 8.7e-115 417.5 309 68.3
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 8.7e-115 417.5 309 66.3
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.1e-114 417.2 297 68.7
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.9e-114 416.4 259 79.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 2.5e-114 416.0 309 67.3
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 4.3e-114 415.2 347 62.5
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.2e-113 413.7 305 68.2
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 6.2e-113 411.4 306 67.3
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 8.1e-113 411.0 299 67.9
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 8.1e-113 411.0 267 72.7
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.1e-112 410.6 304 67.8
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.8e-112 409.8 302 69.2
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.0e-112 408.7 305 67.9
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 4.0e-112 408.7 313 67.7
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 5.8e-111 404.8 313 65.5
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 4.9e-110 401.7 313 66.8
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 2.1e-108 396.4 301 65.8
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 3.0e-107 392.5 304 65.1
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 6.6e-107 391.3 305 63.0
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 3.3e-106 389.0 275 66.5
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.8e-104 383.3 306 64.7
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.5e-103 380.2 299 64.2
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.1e-101 374.0 310 62.9
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.3e-99 367.1 287 64.5
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 3.0e-99 365.9 229 76.4
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.9e-90 336.7 276 58.3
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 8.4e-86 321.2 283 56.2
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 5.5e-85 318.5 290 54.1
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.2e-84 317.4 276 56.2
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.1e-84 316.6 230 69.1
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.1e-83 312.0 297 52.9
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 8.7e-83 311.2 306 54.6
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.3e-82 308.9 301 54.2
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 5.7e-82 308.5 295 53.6
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 4.8e-81 305.4 278 56.1
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.8e-80 303.5 285 52.3
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 3.1e-80 302.8 294 50.7
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 5.9e-79 298.5 271 57.2
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.9e-77 293.5 304 53.6
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 7.2e-77 291.6 202 69.3
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 4.5e-71 272.3 228 59.6
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 8.8e-67 258.1 194 68.6
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.1e-66 257.7 251 53.4
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 5.9e-63 245.4 221 52.5
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-62 244.6 213 60.1
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 6.5e-62 241.9 322 47.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.1e-58 231.1 149 76.5
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.1e-58 231.1 182 63.7
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.6e-58 229.9 188 62.8
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 3.3e-58 229.6 147 72.1
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 5.9e-55 218.8 220 51.8
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.8e-51 207.2 294 39.1
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 6.5e-46 188.7 142 64.1
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 6.8e-35 152.1 278 30.9
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 6.3e-33 145.6 312 28.5
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-29 134.0 105 64.8
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 3.1e-27 126.7 133 52.6
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.3e-25 121.3 124 53.2
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 1.4e-24 117.9 209 31.6
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.0e-24 115.5 76 76.3
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 9.2e-24 115.2 303 27.7
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 2.8e-20 103.6 305 28.9
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 9.5e-13 78.6 184 35.3
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 2.1e-12 77.4 58 58.6
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 1.6e-07 61.2 40 65.0
FvH4_7g19410 Fragaria vesca HOM05D001952 ORTHO05D005047 6.6e-06 55.8 39 64.1


User provided reference genes

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