Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 6.2e-120 435.6 621 100.0
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 4.4e-118 429.5 621 99.4
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.4e-47 194.5 624 75.0
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 2.2e-45 188.0 624 75.3
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 5.2e-42 176.8 604 74.8
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 1.3e-40 172.2 629 76.6
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 1.4e-39 168.7 594 75.3
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 4.5e-38 163.7 229 69.9
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 2.9e-37 161.0 621 74.1
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.1e-36 159.1 626 73.0
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 3.3e-36 157.5 626 72.5
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.2e-36 157.1 230 69.6
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 7.2e-36 156.4 621 73.3
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.2e-35 155.6 626 72.8
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 4.7e-35 153.7 624 72.3
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 1.4e-34 152.1 624 73.1
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.8e-34 151.8 621 73.3
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.8e-34 151.8 621 73.1
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.8e-34 151.8 230 72.2
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 1.8e-34 151.8 231 64.9
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 5.2e-34 150.2 231 65.8
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 2.6e-33 147.9 230 67.0
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 8.3e-32 142.9 231 74.9
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 2.4e-31 141.4 230 66.1
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 9.2e-31 139.4 231 64.1
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 2.7e-30 137.9 229 65.5
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.3e-29 135.6 624 73.1
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.1e-28 132.5 209 70.3
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 7.3e-28 129.8 586 74.9
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 1.2e-27 129.0 229 55.9
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 1.6e-27 128.6 230 60.4
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 3.6e-27 127.5 228 64.0
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 4.7e-27 127.1 230 64.3
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 1.0e-26 125.9 231 64.1
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 1.4e-26 125.6 622 72.3
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.4e-26 125.6 223 70.0
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 1.8e-26 125.2 229 63.8
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.3e-26 124.8 227 65.2
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 2.3e-26 124.8 233 63.1
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 3.1e-26 124.4 231 67.5
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 6.8e-26 123.2 231 65.8
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 6.8e-26 123.2 229 65.1
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 6.8e-26 123.2 231 64.1
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 8.9e-26 122.9 227 64.3
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 8.9e-26 122.9 227 64.8
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 2.0e-25 121.7 231 65.8
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.6e-25 121.3 227 63.0
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.6e-25 121.3 210 67.6
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.4e-25 120.9 225 66.7
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 4.4e-25 120.6 231 61.5
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 5.8e-25 120.2 233 63.1
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 5.8e-25 120.2 229 64.6
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 9.8e-25 119.4 227 64.8
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 1.7e-24 118.6 229 59.0
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.7e-24 117.5 224 65.2
FAN23G2385 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.9e-24 117.1 138 44.9
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 4.9e-24 117.1 226 65.0
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 4.9e-24 117.1 92 62.0
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 8.3e-24 116.3 229 60.3
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 1.4e-23 115.5 204 64.2
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 4.1e-23 114.0 230 68.3
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 4.1e-23 114.0 206 76.2
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 4.1e-23 114.0 143 43.4
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 5.4e-23 113.6 208 67.8
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 9.2e-23 112.8 223 61.9
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.2e-22 112.5 232 60.3
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 1.2e-22 112.5 231 31.2
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 2.0e-22 111.7 225 66.2
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.0e-22 111.7 225 66.2
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.7e-22 111.3 205 62.0
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 7.8e-22 109.8 143 42.0
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.0e-21 109.4 231 64.5
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 1.3e-21 109.0 597 72.7
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 2.3e-21 108.2 178 75.8
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 3.0e-21 107.8 145 40.7
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 5.0e-21 107.1 230 60.9
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 6.6e-21 106.7 96 55.2
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 8.6e-21 106.3 203 70.9
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 8.6e-21 106.3 194 61.9
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.1e-20 105.9 203 31.5
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 1.1e-20 105.9 189 69.3
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.1e-20 105.9 92 57.6
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 1.5e-20 105.5 228 58.8
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 2.5e-20 104.8 224 71.0
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 2.5e-20 104.8 188 60.6
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 3.3e-20 104.4 198 66.2
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 1.6e-19 102.1 198 66.7
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.6e-19 102.1 97 52.6
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 2.1e-19 101.7 95 54.7
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 2.1e-19 101.7 186 67.2
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 2.1e-19 101.7 224 57.6
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 2.8e-19 101.3 224 66.1
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 2.8e-19 101.3 230 37.8
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 3.6e-19 100.9 231 60.6
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 4.7e-19 100.5 204 70.1
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 4.7e-19 100.5 204 70.1
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.4e-18 99.0 202 71.3
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 1.8e-18 98.6 206 62.1
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 3.1e-18 97.8 194 74.7
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 5.2e-18 97.1 186 75.3
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 6.8e-18 96.7 206 62.1
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 6.8e-18 96.7 96 47.9
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 6.8e-18 96.7 222 57.7
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 8.9e-18 96.3 150 39.3
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 1.2e-17 95.9 206 61.2
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 1.2e-17 95.9 206 62.1
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 2.0e-17 95.1 231 36.8
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 2.6e-17 94.7 228 55.3
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 4.4e-17 94.0 224 54.5
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 7.5e-17 93.2 227 60.8
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 7.5e-17 93.2 211 59.2
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 9.8e-17 92.8 92 51.1
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 9.8e-17 92.8 229 61.6
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.3e-16 92.4 221 58.4
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 2.2e-16 91.7 186 64.0
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 3.7e-16 90.9 186 65.1
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 3.7e-16 90.9 186 65.1
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 4.9e-16 90.5 206 61.7
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 4.9e-16 90.5 206 61.7
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 6.4e-16 90.1 94 45.7
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 6.4e-16 90.1 86 53.5
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 1.9e-15 88.6 203 54.2
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 3.2e-15 87.8 229 39.3
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 4.1e-15 87.4 216 53.7
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 5.4e-15 87.0 231 39.8
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 7.1e-15 86.7 216 53.7
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 7.1e-15 86.7 216 53.7
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.2e-14 85.9 191 27.7
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 1.6e-14 85.5 216 53.2
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 2.1e-14 85.1 216 53.2
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 4.6e-14 84.0 211 58.8
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 4.6e-14 84.0 188 56.4
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 7.8e-14 83.2 165 65.5
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.0e-13 82.8 187 63.1
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 1.3e-13 82.4 191 27.2
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.3e-13 81.6 166 70.5
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 3.0e-13 81.3 188 55.3
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 3.0e-13 81.3 188 27.1
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.0e-13 81.3 146 33.6
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 3.9e-13 80.9 197 34.0
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 5.1e-13 80.5 185 60.5
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 6.6e-13 80.1 204 53.4
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 6.6e-13 80.1 167 73.1
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 8.6e-13 79.7 183 61.2
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 1.1e-12 79.3 44 79.5
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.1e-12 79.3 224 41.5
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.1e-12 79.3 194 59.8
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.1e-12 79.3 194 59.8
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 1.9e-12 78.6 188 33.5
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 1.9e-12 78.6 204 57.8
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.5e-12 78.2 227 41.4
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 5.6e-12 77.0 187 27.8
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 9.5e-12 76.3 44 72.7
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 1.2e-11 75.9 145 36.6
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 1.2e-11 75.9 43 72.1
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 1.2e-11 75.9 167 70.1
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 2.1e-11 75.1 186 40.3
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 2.1e-11 75.1 140 33.6
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.1e-11 75.1 224 51.3
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 3.6e-11 74.3 89 44.9
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 4.7e-11 73.9 226 21.7
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 8.1e-11 73.2 204 52.0
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 8.1e-11 73.2 62 56.5
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 1.1e-10 72.8 51 62.7
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.1e-10 72.8 60 53.3
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.4e-10 72.4 224 50.9
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 1.4e-10 72.4 224 50.4
TAR624G0021 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.4e-10 72.4 95 43.2
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.8e-10 72.0 91 40.7
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.8e-10 72.0 202 57.9
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 1.8e-10 72.0 54 61.1
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 3.1e-10 71.2 185 62.2
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 6.8e-10 70.1 69 47.8
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 2.0e-09 68.6 41 70.7
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 2.6e-09 68.2 179 60.3
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 3.4e-09 67.8 43 62.8
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.7e-08 65.5 205 24.4
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 1.7e-08 65.5 141 32.6
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 2.9e-08 64.7 33 84.8
Psat7g013440 Pisum sativum HOM05D003689 ORTHO05D003950 2.9e-08 64.7 42 61.9
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 3.7e-08 64.3 81 40.7
Cpa.g.sc78.81 Carica papaya HOM05D003689 ORTHO05D003950 1.1e-07 62.8 147 34.7
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 5.4e-07 60.5 54 53.7
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 4.6e-06 57.4 169 23.1


User provided reference genes

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