Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.6e-144 515.4 266 100.0
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 2.3e-95 352.8 269 70.3
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 5.6e-94 348.2 270 67.8
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.4e-92 343.6 278 66.2
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 3.1e-92 342.4 281 65.5
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.1e-89 334.0 265 68.3
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.6e-88 328.6 266 66.2
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.3e-87 327.0 266 66.2
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.0e-87 325.1 266 66.2
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-86 323.9 266 65.4
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 5.6e-86 321.6 265 66.4
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.3e-86 321.2 265 66.4
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.3e-86 321.2 265 66.4
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 1.6e-85 320.1 263 66.5
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 2.8e-85 319.3 266 66.9
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 4.0e-84 315.5 269 63.6
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 4.4e-83 312.0 272 64.0
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.2e-82 309.7 264 62.9
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.3e-82 307.8 264 62.5
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.4e-81 306.2 262 63.4
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 9.2e-81 304.3 280 60.4
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.2e-80 303.9 272 61.8
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 3.5e-80 302.4 269 62.8
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 1.7e-79 300.1 268 62.3
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 3.0e-79 299.3 266 60.9
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 3.0e-79 299.3 265 62.6
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 3.9e-79 298.9 265 61.5
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 5.1e-79 298.5 273 60.8
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 6.6e-79 298.1 273 60.8
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 5.6e-78 295.0 263 60.1
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 7.3e-78 294.7 263 60.8
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.6e-77 293.5 282 59.6
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 4.7e-77 292.0 267 59.9
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 4.7e-77 292.0 263 60.5
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.8e-76 290.0 262 59.9
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.4e-76 289.7 260 61.2
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.2e-76 288.5 260 60.8
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 5.2e-76 288.5 266 59.4
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 2.6e-75 286.2 258 60.9
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 4.4e-75 285.4 258 58.5
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 7.6e-75 284.6 266 59.0
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.3e-74 283.9 273 59.3
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 2.9e-74 282.7 272 56.2
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 8.4e-74 281.2 270 60.7
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.4e-73 279.6 265 57.4
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.1e-73 278.9 260 58.8
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 4.1e-73 278.9 265 59.2
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 7.1e-73 278.1 267 57.7
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-72 277.3 221 66.1
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 2.1e-72 276.6 267 58.4
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.5e-72 275.8 221 65.2
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 3.9e-71 272.3 265 56.6
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 2.8e-69 266.2 261 59.0
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 3.6e-69 265.8 244 58.6
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 3.6e-69 265.8 266 56.0
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.2e-69 265.0 245 60.4
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.8e-68 263.5 258 57.8
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.4e-68 263.1 260 54.2
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.8e-67 258.5 260 53.1
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 7.6e-67 258.1 263 55.9
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 9.9e-67 257.7 262 55.7
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 1.3e-66 257.3 253 57.3
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.7e-66 256.9 256 56.2
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 3.8e-66 255.8 263 54.4
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 4.9e-66 255.4 261 53.6
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.9e-66 255.4 269 55.4
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 8.4e-66 254.6 268 55.2
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.2e-65 252.3 262 55.7
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.2e-65 252.3 262 55.7
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.4e-65 251.9 262 50.8
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 7.1e-65 251.5 262 50.8
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 7.1e-65 251.5 268 56.7
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.1e-64 250.0 262 51.1
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 2.1e-64 250.0 266 53.4
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 7.8e-64 248.1 253 52.6
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.0e-63 247.7 260 55.0
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.3e-63 246.5 259 52.9
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.9e-63 245.7 220 61.8
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 3.9e-63 245.7 268 50.4
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.1e-62 244.2 253 53.0
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.5e-62 243.0 178 68.5
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.3e-62 242.3 262 50.0
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 2.1e-61 240.0 263 53.6
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.1e-60 237.7 261 51.3
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.8e-60 236.9 271 50.2
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.8e-60 236.9 266 53.8
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 2.4e-60 236.5 278 49.6
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 5.3e-60 235.3 267 52.8
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.0e-59 233.4 263 52.1
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 7.6e-59 231.5 265 50.6
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.7e-58 230.3 259 49.0
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 8.4e-58 228.0 267 51.3
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.4e-57 226.5 269 51.7
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.2e-57 226.1 265 49.8
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.3e-55 220.7 256 52.3
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.3e-55 219.9 284 46.1
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 3.9e-55 219.2 265 51.7
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 6.7e-55 218.4 280 46.4
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.9e-54 216.9 254 49.2
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.5e-54 216.5 256 48.0
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.3e-53 214.2 254 51.2
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 2.1e-53 213.4 265 49.1
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.8e-53 213.0 207 56.0
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 6.2e-53 211.8 262 48.1
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.1e-52 211.1 260 48.8
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.8e-52 210.3 209 55.0
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 4.0e-52 209.1 259 47.5
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 6.9e-52 208.4 251 49.4
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 2.0e-51 206.8 264 47.7
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 7.6e-51 204.9 204 54.9
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.7e-50 203.8 264 46.6
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.2e-50 203.4 261 46.7
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 6.4e-50 201.8 259 47.5
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 6.4e-50 201.8 251 49.0
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 6.4e-50 201.8 254 49.2
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 6.4e-50 201.8 251 49.0
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 8.4e-50 201.4 259 46.3
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.4e-49 200.7 252 48.4
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.4e-49 200.7 178 59.0
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.4e-49 200.7 178 59.0
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 3.2e-49 199.5 259 46.7
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.2e-49 199.5 178 57.3
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 7.1e-49 198.4 268 45.5
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.6e-48 195.7 258 45.3
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 7.9e-48 194.9 178 56.7
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.3e-47 194.1 219 48.9
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.3e-47 194.1 254 46.1
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.8e-47 193.7 253 45.1
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 6.7e-47 191.8 256 44.5
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.5e-46 189.9 265 45.3
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 5.6e-46 188.7 266 45.9
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 4.0e-44 182.6 256 43.4
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 9.0e-44 181.4 119 72.3
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.5e-43 180.6 258 41.9
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 2.0e-43 180.3 259 44.0
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.6e-43 179.9 116 72.4
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.0e-42 177.9 259 41.3
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.8e-42 176.0 208 52.9
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 2.5e-41 173.3 158 55.1
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.2e-41 172.6 150 58.7
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 9.3e-41 171.4 279 39.1
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 5.1e-39 165.6 197 50.8
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 7.4e-38 161.8 226 43.4
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.7e-37 159.5 102 77.5
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.5e-33 146.7 145 54.5
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 3.2e-33 146.4 168 56.0
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.3e-30 136.0 131 51.9
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 5.9e-27 125.6 108 53.7
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 5.1e-23 112.5 113 49.6
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.4e-22 108.6 82 67.1
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 6.5e-18 95.5 254 31.9
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.7e-15 85.5 70 60.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 1.5e-14 84.3 102 42.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.0e-14 84.0 95 44.2
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 2.6e-14 83.6 289 26.3
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.3e-13 81.3 98 37.8
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 3.8e-10 69.7 179 28.5
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 1.8e-07 60.8 260 26.2


User provided reference genes

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