Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 2.2e-142 510.4 371 100.0
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 8.4e-102 375.6 372 73.9
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 3.6e-97 360.1 248 75.4
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-94 351.7 247 73.7
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 2.9e-94 350.5 245 74.3
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-91 341.7 245 71.8
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 9.9e-87 325.5 249 71.1
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 3.4e-71 273.9 250 60.4
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 4.3e-66 256.9 238 61.3
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 4.3e-66 256.9 240 60.8
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 2.8e-65 254.2 243 60.1
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 3.1e-64 250.8 255 55.3
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 4.1e-64 250.4 216 61.1
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 4.1e-64 250.4 242 60.7
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 2.0e-63 248.1 243 56.0
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 3.4e-63 247.3 179 72.6
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 3.4e-63 247.3 243 57.6
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 4.5e-63 246.9 239 58.2
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 5.9e-63 246.5 220 60.0
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.3e-62 245.4 245 56.3
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 1.4e-61 241.9 246 56.5
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.9e-61 241.5 239 59.4
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 1.9e-61 241.5 212 61.3
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.9e-61 241.5 220 57.7
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.2e-61 240.4 239 59.0
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 5.5e-61 240.0 217 61.8
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 5.5e-61 240.0 241 55.6
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 7.2e-61 239.6 215 60.9
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.6e-60 238.4 220 56.8
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-60 238.0 201 64.7
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 2.7e-60 237.7 245 53.5
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.7e-60 237.7 245 52.2
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 3.6e-60 237.3 169 69.2
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 4.6e-60 236.9 195 62.1
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.6e-60 236.9 199 60.8
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.0e-59 235.7 238 58.0
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.8e-59 235.0 199 60.3
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 3.0e-59 234.2 236 56.4
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 1.1e-58 232.3 214 61.2
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.0e-58 231.5 229 54.1
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.6e-58 231.1 199 59.8
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 5.7e-58 229.9 233 54.1
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 7.4e-58 229.6 237 54.9
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-57 228.8 170 68.8
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 1.7e-57 228.4 237 54.9
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 1.7e-57 228.4 241 51.0
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.7e-57 228.4 241 52.3
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 3.7e-57 227.3 233 53.2
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 4.1e-56 223.8 199 61.8
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 6.9e-56 223.0 242 52.1
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 9.1e-56 222.6 197 58.9
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 1.2e-55 222.2 226 55.3
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.5e-55 221.9 252 50.8
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.5e-55 221.9 168 66.1
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 1.5e-55 221.9 238 50.0
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 3.4e-55 220.7 238 52.1
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 5.9e-55 219.9 242 50.8
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-54 218.8 151 71.5
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-54 218.8 151 71.5
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 1.3e-54 218.8 169 66.3
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 2.2e-54 218.0 169 65.1
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 2.9e-54 217.6 169 65.1
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 2.9e-54 217.6 169 65.1
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 3.8e-54 217.2 232 52.6
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 1.1e-53 215.7 243 49.4
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.9e-53 214.9 201 56.2
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 3.2e-53 214.2 235 52.8
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 7.2e-53 213.0 215 54.9
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 1.6e-52 211.8 247 49.0
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 4.7e-52 210.3 187 58.8
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 7.9e-52 209.5 216 52.8
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.5e-50 205.3 175 60.0
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 5.7e-50 203.4 211 53.6
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 8.2e-49 199.5 176 58.0
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 4.1e-48 197.2 169 59.2
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.1e-48 197.2 205 56.6
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.1e-48 196.1 195 56.4
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.2e-47 195.7 180 56.7
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.0e-47 194.9 200 56.5
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 8.5e-46 189.5 225 55.6
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.5e-45 188.7 204 53.9
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.5e-45 188.7 189 56.1
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 4.2e-45 187.2 120 78.3
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 3.0e-43 181.0 188 52.7
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.7e-43 179.9 139 65.5
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 4.4e-42 177.2 129 69.0
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 5.7e-42 176.8 205 50.7
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 2.2e-41 174.9 129 69.8
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 2.8e-41 174.5 147 61.2
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 1.1e-40 172.6 181 51.9
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.8e-40 171.8 193 51.3
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 3.1e-40 171.0 139 59.7
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 7.0e-40 169.9 146 58.2
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.7e-39 167.9 168 51.8
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.7e-39 167.9 168 51.8
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 5.9e-39 166.8 216 44.4
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.7e-38 165.2 184 50.5
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.7e-38 165.2 107 75.7
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 2.9e-38 164.5 166 54.2
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 7.2e-37 159.8 172 52.9
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 9.4e-37 159.5 165 51.5
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 8.0e-36 156.4 169 52.1
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 3.0e-35 154.5 156 50.6
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.2e-35 153.7 170 52.4
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 6.8e-35 153.3 116 65.5
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 2.0e-34 151.8 137 56.9
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 6.3e-33 146.7 210 41.9
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.4e-32 145.6 212 43.4
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 5.4e-32 143.7 209 41.6
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 2.7e-31 141.4 210 40.5
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.0e-30 139.4 161 50.3
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 2.3e-30 138.3 137 51.8
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 3.2e-29 134.4 129 51.9
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 3.6e-28 131.0 179 43.0
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.5e-26 125.6 166 45.2
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 4.9e-25 120.6 121 53.7
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 1.2e-23 115.9 208 37.5
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 8.6e-22 109.8 121 49.6
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 5.6e-21 107.1 110 55.5
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 5.2e-19 100.5 124 44.4
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 3.9e-14 84.3 62 62.9
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 2.0e-10 72.0 146 34.2
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 6.4e-09 67.0 45 73.3
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 3.5e-07 61.2 128 32.0
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 4.6e-07 60.8 190 27.9
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 6.0e-07 60.5 108 31.5
CDE07G1890 Ceratophyllum demersum HOM05D001121 ORTHO05D003422 7.8e-07 60.1 114 30.7
CANSAT54G1800 Cannabis sativa HOM05D006008 ORTHO05D007334 1.7e-06 58.9 39 74.4
Gohir.A12G183600 Gossypium hirsutum HOM05D005362 ORTHO05D006895 3.0e-06 58.2 120 30.8
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 3.0e-06 58.2 162 25.9
GSVIVG01008125001 Vitis vinifera HOM05D005362 ORTHO05D006895 3.9e-06 57.8 128 29.7
Thecc.05G264500 Theobroma cacao HOM05D007661 ORTHO05D009671 5.0e-06 57.4 160 28.1
COL.COLO4_24316 Corchorus olitorius HOM05D005362 ORTHO05D006895 6.6e-06 57.0 120 28.3


User provided reference genes

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