Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 6.9e-212 740.3 365 100.0
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 2.8e-112 409.5 382 59.7
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 8.1e-112 407.9 256 77.3
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 2.2e-109 399.8 276 70.7
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 2.2e-109 399.8 293 68.6
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 2.7e-107 392.9 253 74.3
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 4.6e-107 392.1 212 84.4
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 7.9e-107 391.3 289 70.9
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 7.9e-107 391.3 322 63.7
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 1.8e-106 390.2 218 82.1
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 1.8e-106 390.2 252 74.6
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.8e-106 390.2 217 83.4
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 3.0e-106 389.4 212 84.9
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.0e-106 389.4 212 84.9
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.0e-106 389.4 212 84.9
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.0e-106 389.4 321 65.1
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 8.7e-106 387.9 212 84.9
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 8.7e-106 387.9 217 83.4
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.5e-105 387.1 319 64.3
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 1.5e-105 387.1 358 59.5
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.9e-105 386.7 319 63.9
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.9e-105 386.7 390 57.2
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.5e-105 386.3 249 73.5
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 4.3e-105 385.6 252 74.6
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 9.6e-105 384.4 274 71.2
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 9.6e-105 384.4 311 64.0
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 9.6e-105 384.4 209 85.2
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.6e-104 383.6 277 69.3
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 3.7e-104 382.5 269 69.9
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 1.1e-103 380.9 320 61.6
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 1.1e-103 380.9 238 77.3
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.8e-103 380.2 316 63.6
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 1.8e-103 380.2 328 64.0
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 3.1e-103 379.4 292 66.8
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 3.1e-103 379.4 289 68.9
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 9.0e-103 377.9 241 74.7
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 9.0e-103 377.9 234 76.5
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 2.0e-102 376.7 291 67.4
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 2.6e-102 376.3 249 71.5
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 2.6e-102 376.3 230 75.7
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 5.8e-102 375.2 358 58.1
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 1.0e-101 374.4 319 62.1
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.0e-101 374.4 324 64.2
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 2.9e-101 372.9 233 74.7
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 4.9e-101 372.1 204 83.8
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 1.4e-100 370.5 292 65.8
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 1.4e-100 370.5 374 56.4
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.9e-100 370.2 203 82.3
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.9e-100 370.2 287 65.2
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 2.5e-100 369.8 287 64.8
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 3.2e-100 369.4 337 59.1
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 7.1e-100 368.2 274 68.2
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 7.1e-100 368.2 324 58.3
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 9.3e-100 367.9 203 83.7
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 1.2e-99 367.5 224 77.2
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.2e-99 367.5 203 82.8
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.2e-99 367.5 203 83.7
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.2e-99 367.5 273 66.7
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 2.7e-99 366.3 203 82.8
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 3.5e-99 365.9 203 80.3
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 3.5e-99 365.9 203 80.3
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 3.5e-99 365.9 203 80.3
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.3e-98 364.0 203 81.3
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 2.3e-98 363.2 338 57.7
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 2.3e-98 363.2 334 59.0
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 2.3e-98 363.2 309 61.2
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 3.0e-98 362.8 352 56.8
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 3.9e-98 362.5 336 57.7
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 5.1e-98 362.1 211 80.1
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 5.1e-98 362.1 311 59.5
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 5.1e-98 362.1 331 60.4
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 5.1e-98 362.1 231 75.3
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 6.7e-98 361.7 325 57.8
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 8.7e-98 361.3 334 58.1
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 8.7e-98 361.3 213 80.3
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 8.7e-98 361.3 307 62.5
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 4.3e-97 359.0 204 79.4
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 4.3e-97 359.0 208 80.3
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 5.7e-97 358.6 192 84.4
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 7.4e-97 358.2 343 59.2
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.3e-96 357.5 264 65.5
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.3e-96 357.5 264 65.5
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.6e-96 357.1 220 76.8
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 2.1e-96 356.7 308 62.3
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 2.8e-96 356.3 324 58.0
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 2.8e-96 356.3 348 56.6
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 3.7e-96 355.9 327 59.6
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 4.8e-96 355.5 300 61.0
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 8.2e-96 354.8 204 78.9
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 8.2e-96 354.8 230 73.0
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 1.4e-95 354.0 289 63.0
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 1.4e-95 354.0 289 63.0
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.4e-95 353.2 266 66.9
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 3.1e-95 352.8 213 75.1
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 3.1e-95 352.8 328 57.0
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 3.1e-95 352.8 193 82.4
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 6.9e-95 351.7 222 71.2
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 6.9e-95 351.7 204 77.9
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 1.2e-94 350.9 232 72.4
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 2.6e-94 349.7 211 78.7
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 3.4e-94 349.4 193 81.3
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 4.5e-94 349.0 225 74.2
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 5.8e-94 348.6 200 77.5
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 3.8e-93 345.9 281 62.6
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 3.2e-92 342.8 204 75.5
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 4.6e-91 339.0 213 71.8
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 1.0e-90 337.8 204 75.0
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.8e-90 337.0 213 70.9
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.1e-89 334.3 199 74.4
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.1e-87 327.8 270 60.0
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 1.4e-87 327.4 203 73.4
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 2.4e-87 326.6 362 51.9
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.0e-86 323.6 199 71.9
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.5e-86 322.4 212 68.4
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 4.5e-86 322.4 310 55.5
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.7e-83 313.2 214 65.4
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 3.3e-81 306.2 305 55.7
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 2.5e-76 290.0 160 77.5
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 7.9e-75 285.0 221 56.1
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 6.7e-74 282.0 161 76.4
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 4.8e-72 275.8 160 75.6
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.6e-70 270.8 223 54.7
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 2.6e-70 270.0 224 62.1
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 3.5e-70 269.6 206 56.3
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 2.2e-69 266.9 212 65.6
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 2.5e-68 263.5 152 81.6
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 2.7e-67 260.0 146 79.5
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 1.5e-65 254.2 142 78.9
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 6.1e-59 232.3 204 53.4
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 1.1e-52 211.5 117 78.6
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 3.0e-50 203.4 151 64.2
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.4e-47 194.5 156 60.9
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 4.3e-44 183.0 174 47.1
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 5.4e-31 139.4 148 44.6
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.1e-22 110.9 83 53.0
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 2.1e-19 100.9 89 62.9
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 6.2e-19 99.4 199 40.2
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 2.0e-17 94.4 129 48.1
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 4.1e-15 86.7 131 45.0
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 9.2e-15 85.5 59 72.9
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 4.6e-14 83.2 59 72.9
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 2.1e-11 74.3 190 36.3
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 1.4e-10 71.6 95 47.4
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 2.2e-08 64.3 88 45.5
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 2.1e-06 57.8 43 60.5


User provided reference genes

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