Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1528 Cannabis sativa HOM05D000804 ORTHO05D005389 3.2e-104 381.7 188 100.0
QL04p052206 Quercus lobata HOM05D000804 ORTHO05D005389 6.3e-76 287.7 191 72.8
CSS0037336 Camellia sinensis var. sinensis HOM05D000804 ORTHO05D005389 6.1e-71 271.2 187 69.5
Prupe.2G098200 Prunus persica HOM05D000804 ORTHO05D005389 6.1e-71 271.2 187 71.1
Potri.019G043800 Populus trichocarpa HOM05D000804 ORTHO05D005389 1.0e-70 270.4 190 66.3
Sabra19G0054400 Salix brachista HOM05D000804 ORTHO05D005389 1.7e-68 263.1 190 64.7
Manes.09G131500 Manihot esculenta HOM05D000804 ORTHO05D005389 2.2e-68 262.7 187 65.2
MD07G1077300 Malus domestica HOM05D000804 ORTHO05D005389 4.8e-68 261.5 188 69.7
RcHm_v2.0_Chr1g0337111 Rosa chinensis HOM05D000804 ORTHO05D005389 4.8e-68 261.5 189 67.2
GSVIVG01011337001 Vitis vinifera HOM05D000804 ORTHO05D005389 1.1e-67 260.4 184 67.4
Glyma.03G021000 Glycine max HOM05D000804 ORTHO05D005389 1.4e-67 260.0 190 65.8
FvH4_7g07130 Fragaria vesca HOM05D000804 ORTHO05D005389 1.8e-67 259.6 187 66.8
FAN06G2879 Fragaria x ananassa HOM05D000804 ORTHO05D005389 1.8e-67 259.6 187 66.8
Thecc.05G230500 Theobroma cacao HOM05D000804 ORTHO05D005389 1.8e-67 259.6 189 66.7
Duzib128G1116 Durio zibethinus HOM05D000804 ORTHO05D005389 5.4e-67 258.1 189 65.6
Gohir.A13G075600 Gossypium hirsutum HOM05D000804 ORTHO05D005389 7.0e-67 257.7 191 67.0
Gohir.D13G099900 Gossypium hirsutum HOM05D000804 ORTHO05D005389 7.0e-67 257.7 191 67.0
Gorai.013G111900 Gossypium raimondii HOM05D000804 ORTHO05D005389 7.0e-67 257.7 191 67.0
vmacro21110 Vaccinium macrocarpon HOM05D000804 ORTHO05D005389 9.1e-67 257.3 187 66.8
FAN10G1244 Fragaria x ananassa HOM05D000804 ORTHO05D005389 3.5e-66 255.4 187 65.8
Lalb_Chr07g0189561 Lupinus albus HOM05D000804 ORTHO05D005389 3.5e-66 255.4 190 63.2
Rhsim01G0134900 Rhododendron simsii HOM05D000804 ORTHO05D005389 3.5e-66 255.4 187 64.7
Ciclev10030562m.g Citrus clementina HOM05D000804 ORTHO05D005389 1.0e-65 253.8 196 61.7
MELO3C020372.2 Cucumis melo HOM05D000804 ORTHO05D005389 6.5e-65 251.1 185 64.9
TWI32G1345 Tripterygium wilfordii HOM05D000804 ORTHO05D005389 2.5e-64 249.2 189 63.5
Lj3g0026096 Lotus japonicus HOM05D000804 ORTHO05D005389 3.2e-64 248.8 190 61.1
Cpa.g.sc73.84 Carica papaya HOM05D000804 ORTHO05D005389 7.2e-64 247.7 199 57.3
Ca_23822_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 7.2e-64 247.7 191 61.3
Ca_23827_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 7.2e-64 247.7 191 61.3
Cfa003676 Carpinus fangiana HOM05D000804 ORTHO05D005389 3.6e-63 245.4 184 67.4
Psat4g196240 Pisum sativum HOM05D000804 ORTHO05D005389 3.6e-63 245.4 192 61.5
Phvul.010G085900 Phaseolus vulgaris HOM05D000804 ORTHO05D005389 6.1e-63 244.6 190 61.6
VMungo0331G1063 Vigna mungo HOM05D000804 ORTHO05D005389 6.1e-63 244.6 190 61.1
Cc02_g26260 Coffea canephora HOM05D000804 ORTHO05D005389 1.0e-62 243.8 182 61.0
Haze_15812 Corylus avellana HOM05D000804 ORTHO05D005389 1.0e-62 243.8 188 65.4
PSO063G5197 Papaver somniferum HOM05D000804 ORTHO05D005389 1.4e-62 243.4 195 57.9
Medtr8g035620 Medicago truncatula HOM05D000804 ORTHO05D005389 5.2e-62 241.5 190 60.5
TPR.G30883 Trifolium pratense HOM05D000804 ORTHO05D005389 8.8e-62 240.7 185 61.6
Solyc01g081050.4 Solanum lycopersicum HOM05D000804 ORTHO05D005389 2.6e-61 239.2 184 62.0
Nn1g09657 Nelumbo nucifera HOM05D000804 ORTHO05D005389 1.3e-60 236.9 194 56.7
arahy.Tifrunner.gnm1.ann1.A8SNFY Arachis hypogaea HOM05D000804 ORTHO05D005389 8.3e-60 234.2 190 58.4
CAN.G700.21 Capsicum annuum HOM05D000804 ORTHO05D005389 1.1e-59 233.8 185 57.3
ClCG06G008140 Citrullus lanatus HOM05D000804 ORTHO05D005389 1.4e-59 233.4 189 59.3
AUR62017553 Chenopodium quinoa HOM05D000804 ORTHO05D005389 1.8e-59 233.0 186 58.6
Sed0024810 Sechium edule HOM05D000804 ORTHO05D005389 7.0e-59 231.1 189 59.8
arahy.Tifrunner.gnm1.ann1.00QVML Arachis hypogaea HOM05D000804 ORTHO05D005389 2.7e-58 229.2 190 57.4
CsaV3_2G011020 Cucumis sativus L. HOM05D000804 ORTHO05D005389 4.5e-58 228.4 185 60.0
AT5G35930 Arabidopsis thaliana HOM05D000804 ORTHO05D005389 5.9e-58 228.0 184 57.6
EL10Ac5g10540 Beta vulgaris HOM05D000804 ORTHO05D005389 7.8e-58 227.6 185 58.4
Migut.O00426 Erythranthe guttata HOM05D000804 ORTHO05D005389 1.7e-57 226.5 192 55.7
Atru.chr2.1715 Acer truncatum HOM05D000804 ORTHO05D005389 6.6e-57 224.6 189 57.1
Aa31LG9G17950 Aethionema arabicum HOM05D000804 ORTHO05D005389 1.5e-56 223.4 192 53.1
Ah.02g110870 Amaranthus hybridus HOM05D000804 ORTHO05D005389 1.9e-56 223.0 188 54.8
SalBow4G2892 Salvia bowleyana HOM05D000804 ORTHO05D005389 3.3e-56 222.2 208 53.4
MSTRG.4983 Avicennia marina HOM05D000804 ORTHO05D005389 1.6e-55 219.9 188 55.3
DCAR_029554 Daucus carota HOM05D000804 ORTHO05D005389 1.6e-55 219.9 185 55.1
Nitab4.5_0003594g0020 Nicotiana tabacum HOM05D000804 ORTHO05D005389 1.0e-54 217.2 224 50.0
Aqoxy3G02136 Aquilegia oxysepala HOM05D000804 ORTHO05D005389 1.8e-54 216.5 195 52.8
HanXRQChr01g0020521 Helianthus annuus HOM05D000804 ORTHO05D005389 4.0e-54 215.3 182 55.5
FAN01G0713 Fragaria x ananassa HOM05D000804 ORTHO05D005389 1.2e-53 213.8 187 58.8
BolC8t48020H Brassica oleracea HOM05D000804 ORTHO05D005389 1.5e-53 213.4 219 49.3
BraA08t32948Z Brassica rapa HOM05D000804 ORTHO05D005389 7.5e-53 211.1 219 49.3
ATR0829G026 Amborella trichopoda HOM05D000804 ORTHO05D005389 1.7e-52 209.9 192 52.1
THA.LOC104825451 Tarenaya hassleriana HOM05D000804 ORTHO05D005389 2.2e-52 209.5 186 55.4
Peaxi162Scf00592g00212 Petunia axillaris HOM05D000804 ORTHO05D005389 1.8e-51 206.5 185 55.7
HPP92_005377 Vanilla planifolia HOM05D000804 ORTHO05D005389 1.8e-51 206.5 189 54.5
Sc17g0001320 Simmondsia chinensis HOM05D000804 ORTHO05D005389 3.2e-51 205.7 182 52.2
AUR62028598 Chenopodium quinoa HOM05D000804 ORTHO05D005389 9.2e-51 204.1 187 55.1
CDE12G0592 Ceratophyllum demersum HOM05D000804 ORTHO05D005389 2.0e-50 203.0 198 49.5
Migut.N01690 Erythranthe guttata HOM05D000804 ORTHO05D005389 2.7e-50 202.6 176 56.2
Thhalv10003545m.g Eutrema salsugineum HOM05D000804 ORTHO05D005389 1.0e-49 200.7 183 54.1
Carub.0007s3171 Capsella rubella HOM05D000804 ORTHO05D005389 1.1e-48 197.2 183 54.1
PGR083G1621 Punica granatum HOM05D000804 ORTHO05D005389 1.9e-48 196.4 197 50.3
AL7G44840 Arabidopsis lyrata HOM05D000804 ORTHO05D005389 2.8e-47 192.6 184 52.2
Zm00001eb378990 Zea mays HOM05D000804 ORTHO05D005389 2.8e-47 192.6 221 44.8
BcaB04g18018 Brassica carinata HOM05D000804 ORTHO05D005389 6.2e-47 191.4 187 52.4
Os06g0111600 Oryza sativa ssp. japonica HOM05D000804 ORTHO05D005389 8.0e-47 191.0 191 48.7
Oeu024957.1 Olea europaea HOM05D000804 ORTHO05D005389 1.2e-45 187.2 223 45.7
RcHm_v2.0_Chr1g0337141 Rosa chinensis HOM05D000804 ORTHO05D005389 3.4e-45 185.7 138 67.4
Sp7g06220 Schrenkiella parvula HOM05D000804 ORTHO05D005389 4.9e-44 181.8 183 50.8
ECA248G3066 Erigeron canadensis HOM05D000804 ORTHO05D005389 3.2e-43 179.1 139 54.0
BcaC07g37648 Brassica carinata HOM05D000804 ORTHO05D005389 1.6e-42 176.8 186 48.9
A08p09490 Brassica napus HOM05D000804 ORTHO05D005389 3.5e-42 175.6 186 48.9
BcaB04g18016 Brassica carinata HOM05D000804 ORTHO05D005389 7.8e-42 174.5 185 49.2
Lj7C558T5 Lonicera japonica HOM05D000804 ORTHO05D005389 3.3e-40 169.1 186 47.8
SGA_v2.0_scaffold4G02207 Striga asiatica HOM05D000804 ORTHO05D005389 3.1e-38 162.5 194 49.0
unitig_22.g5901 Utricularia gibba HOM05D000804 ORTHO05D005389 1.3e-36 157.1 140 55.7
SMO145G0113 Selaginella moellendorffii HOM05D000804 ORTHO05D005389 1.9e-32 143.3 186 37.6
Nitab4.5_0000592g0250 Nicotiana tabacum HOM05D000804 ORTHO05D005389 3.6e-31 139.0 133 54.9
CBR_g4474 Chara braunii HOM05D000804 ORTHO05D005389 1.8e-30 136.7 189 41.3
Dinv43539 Davidia involucrata HOM05D000804 ORTHO05D005389 6.4e-28 128.3 83 71.1
Actinidia21597 Actinidia chinensis HOM05D000804 ORTHO05D005389 8.4e-28 127.9 187 40.1
Sopen01g032670 Solanum pennellii HOM05D000804 ORTHO05D005389 4.3e-24 115.5 83 59.0
Pp3c10_8470 Physcomitrium patens HOM05D000804 ORTHO05D005389 1.6e-18 97.1 101 48.5
PGSC0003DMG400001811 Solanum tuberosum HOM05D000804 ORTHO05D005389 7.8e-18 94.7 75 65.3
Hma1.2p1_0915F.1_g236280 Hydrangea macrophylla HOM05D000804 ORTHO05D005389 3.3e-16 89.4 84 53.6
TAR375G0260 Trochodendron aralioides HOM05D000804 ORTHO05D005389 1.1e-14 84.3 55 67.3
arahy.Tifrunner.gnm1.ann1.GSAX37 Arachis hypogaea HOM05D000804 ORTHO05D005389 3.8e-12 75.9 64 60.9
SEGI_22617 Sequoiadendron giganteum HOM05D000804 ORTHO05D005389 1.4e-11 73.9 66 50.0
HPP92_005383 Vanilla planifolia HOM05D000804 ORTHO05D005389 1.0e-09 67.8 92 42.4
Lsat_1_v5_gn_1_84561 Lactuca sativa HOM05D000804 ORTHO05D005389 1.9e-08 63.5 52 42.3


User provided reference genes

Program Settings