Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 2.0e-234 815.5 440 100.0
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.2e-117 427.6 397 56.2
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 5.0e-116 422.2 397 55.9
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 8.0e-114 414.8 399 56.4
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 3.0e-113 412.9 392 56.4
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 2.0e-112 410.2 391 54.0
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 2.6e-112 409.8 393 53.7
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.2e-111 406.8 390 54.6
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.8e-111 406.4 402 53.5
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.4e-110 402.1 395 54.4
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.4e-110 402.1 395 54.2
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 7.0e-110 401.7 403 52.6
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 1.6e-109 400.6 390 55.4
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.5e-109 399.4 392 52.0
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.9e-109 398.7 393 54.2
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 5.9e-109 398.7 397 52.9
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.3e-108 397.5 397 52.6
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-108 397.1 395 53.9
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 6.6e-108 395.2 398 52.8
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 5.6e-107 392.1 389 51.4
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 7.3e-107 391.7 400 52.0
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 1.6e-106 390.6 399 54.1
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 2.8e-106 389.8 394 53.0
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.8e-105 387.1 393 52.7
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.8e-105 387.1 395 51.9
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.3e-105 386.7 426 51.2
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 3.1e-105 386.3 392 51.3
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 3.1e-105 386.3 397 51.6
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 8.9e-105 384.8 399 50.6
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.2e-104 384.4 390 53.3
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 1.5e-104 384.0 393 51.4
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 2.0e-104 383.6 395 50.6
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 2.0e-104 383.6 392 51.5
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 2.6e-104 383.3 420 51.4
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 3.4e-104 382.9 387 53.0
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 3.4e-104 382.9 413 51.1
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 5.8e-104 382.1 393 51.4
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 7.5e-104 381.7 356 55.1
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 9.8e-104 381.3 425 50.4
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 2.9e-103 379.8 409 49.6
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.9e-102 377.1 393 52.4
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 3.2e-102 376.3 411 50.4
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 5.4e-102 375.6 403 51.9
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 9.2e-102 374.8 401 50.9
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 2.7e-101 373.2 391 51.2
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 6.0e-101 372.1 416 49.8
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 7.8e-101 371.7 397 50.1
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 3.0e-100 369.8 390 52.1
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 3.9e-100 369.4 397 49.9
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 8.6e-100 368.2 373 53.1
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 8.6e-100 368.2 391 50.9
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.5e-99 367.5 385 50.9
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.5e-99 367.5 391 50.9
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 7.3e-99 365.2 393 50.1
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 9.5e-99 364.8 393 49.4
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 1.6e-98 364.0 434 46.3
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.6e-98 362.8 460 45.0
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 4.7e-98 362.5 401 50.4
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.8e-97 360.5 397 49.6
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 4.0e-97 359.4 391 48.6
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 5.2e-97 359.0 381 49.9
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 2.0e-96 357.1 383 49.9
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 2.2e-95 353.6 383 48.0
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.9e-95 352.4 351 53.0
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.4e-94 350.9 388 49.2
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 2.4e-94 350.1 406 48.0
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 3.2e-94 349.7 406 47.8
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 4.1e-94 349.4 429 46.4
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.1e-93 347.1 390 47.9
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 2.7e-93 346.7 398 48.5
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.7e-93 346.7 396 46.7
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 7.8e-93 345.1 390 47.7
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 3.9e-92 342.8 391 48.1
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 8.6e-92 341.7 397 47.1
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 1.1e-91 341.3 399 47.6
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.5e-91 340.1 406 47.0
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 5.6e-91 339.0 393 46.3
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.6e-90 337.4 390 45.6
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 4.0e-89 332.8 397 44.3
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 2.6e-88 330.1 395 45.1
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 3.4e-88 329.7 395 45.3
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 4.4e-88 329.3 392 45.9
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.9e-87 326.6 394 45.2
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 6.4e-87 325.5 317 53.6
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 8.3e-87 325.1 394 44.7
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 8.3e-87 325.1 394 46.7
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 7.1e-86 322.0 390 44.9
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 9.2e-86 321.6 397 45.8
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.2e-85 321.2 392 44.9
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 2.7e-85 320.1 401 42.9
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.6e-85 319.3 395 45.3
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.8e-85 318.5 379 48.5
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 7.8e-85 318.5 603 34.7
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.0e-84 318.2 411 44.0
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 1.3e-84 317.8 403 44.2
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 5.1e-84 315.8 385 43.9
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.1e-81 306.6 417 41.7
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 6.8e-81 305.4 389 43.7
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 7.6e-80 302.0 389 44.2
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 9.9e-80 301.6 389 42.2
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 3.8e-79 299.7 380 41.6
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 3.8e-79 299.7 380 41.6
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 3.8e-79 299.7 380 41.6
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.1e-78 298.1 380 41.3
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.1e-78 298.1 380 41.3
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 2.4e-78 297.0 403 43.9
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 1.2e-77 294.7 389 41.1
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 5.6e-75 285.8 400 43.2
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 6.2e-74 282.3 387 43.2
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 6.2e-74 282.3 397 42.3
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 1.8e-73 280.8 306 48.7
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.5e-72 277.7 395 40.5
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.3e-68 264.6 384 41.9
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.1e-67 261.5 420 38.6
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 4.8e-66 256.1 299 48.5
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 1.6e-61 241.1 246 51.2
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.2e-55 220.7 280 45.7
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.9e-54 217.6 366 40.4
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 9.3e-54 215.3 405 37.8
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.2e-53 214.9 395 37.7
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 7.9e-53 212.2 217 46.5
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 3.2e-46 190.3 443 31.6
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 4.6e-45 186.4 236 41.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 1.0e-44 185.3 431 30.4
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-44 184.9 379 35.4
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 1.8e-44 184.5 236 43.6
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 8.7e-44 182.2 235 45.5
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.6e-42 177.9 315 37.5
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.1e-41 173.3 230 42.2
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.4e-36 158.3 398 32.7
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.7e-35 152.9 136 52.2
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.7e-34 150.2 273 36.3
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.8e-34 149.8 399 31.6
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 6.3e-34 149.4 319 33.5
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.5e-32 143.3 245 38.4
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-30 138.7 394 30.2
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.6e-24 117.5 141 46.1
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.0e-23 115.5 336 30.1
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 5.0e-23 113.2 110 50.0
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.2e-22 110.5 126 47.6
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 7.2e-22 109.4 183 41.0
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 2.1e-21 107.8 108 50.9
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 1.0e-20 105.5 108 50.9
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.0e-20 104.0 186 36.0
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.0e-19 101.3 92 56.5
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 5.7e-19 99.8 450 24.7
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 4.8e-18 96.7 142 40.8
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 3.2e-14 84.0 132 38.6
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.0e-12 79.0 120 39.2
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.6e-11 74.3 109 39.4
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 1.8e-09 68.2 91 42.9
Cre01.g070567 Chlamydomonas reinhardtii HOM05D004436 ORTHO05D005179 2.4e-09 67.8 361 22.2
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 2.0e-08 64.7 119 35.3
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 2.0e-08 64.7 119 35.3
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 7.7e-08 62.8 94 39.4
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 5.0e-07 60.1 128 32.0


User provided reference genes

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