Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 6.0e-138 494.2 255 100.0
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 1.7e-84 316.6 246 67.5
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 3.2e-83 312.4 249 66.7
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 7.2e-83 311.2 251 66.9
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 7.2e-83 311.2 261 66.3
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.4e-81 307.0 249 66.3
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.4e-81 307.0 237 67.5
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 6.8e-81 304.7 248 64.9
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.3e-79 300.4 248 63.7
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 6.3e-79 298.1 224 70.5
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.4e-78 297.0 256 64.1
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 4.1e-78 295.4 244 66.0
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.0e-77 293.1 245 66.1
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 2.7e-77 292.7 221 68.3
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 7.7e-77 291.2 221 66.5
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 1.0e-76 290.8 245 65.7
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.8e-76 288.9 252 64.3
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 5.0e-76 288.5 221 66.1
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 5.0e-76 288.5 221 66.5
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.9e-75 286.6 221 67.4
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.9e-75 286.6 226 67.3
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 2.5e-75 286.2 231 67.5
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 2.5e-75 286.2 249 59.8
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 3.3e-75 285.8 257 61.1
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 7.2e-75 284.6 225 67.1
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 9.5e-75 284.3 225 64.9
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.2e-74 283.9 251 62.2
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 2.1e-74 283.1 232 64.7
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 3.6e-74 282.3 228 65.8
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 3.6e-74 282.3 236 64.4
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 4.7e-74 282.0 226 66.4
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 4.0e-73 278.9 250 60.0
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 8.9e-73 277.7 247 60.3
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.5e-72 276.9 237 60.3
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.5e-72 276.9 273 59.3
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 2.6e-72 276.2 250 61.6
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 9.8e-72 274.2 232 60.8
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.7e-71 273.5 236 61.0
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 2.2e-71 273.1 242 63.2
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.8e-71 272.7 231 60.2
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.8e-71 272.7 227 62.6
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 4.9e-71 271.9 231 60.2
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 4.9e-71 271.9 231 60.2
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 4.9e-71 271.9 226 64.2
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 1.1e-70 270.8 219 62.6
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.1e-70 270.8 235 63.8
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 2.4e-70 269.6 235 62.1
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.2e-70 269.2 230 60.4
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 4.1e-70 268.9 234 60.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 9.2e-70 267.7 250 58.4
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.2e-69 267.3 219 62.1
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.2e-69 267.3 219 62.1
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.2e-69 267.3 244 59.8
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.0e-69 266.5 243 61.7
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 5.9e-69 265.0 234 60.3
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 5.9e-69 265.0 229 59.4
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.0e-68 264.2 228 59.6
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.0e-68 264.2 225 62.7
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.3e-68 263.8 225 62.2
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.7e-68 263.5 244 58.2
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 2.9e-68 262.7 226 61.1
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 2.9e-68 262.7 220 62.3
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.5e-67 260.4 231 59.7
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.9e-67 260.0 246 56.9
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 5.6e-67 258.5 247 59.1
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 5.6e-67 258.5 214 63.6
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.2e-66 257.3 225 62.2
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.2e-66 257.3 245 57.1
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.6e-66 256.9 263 52.5
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 2.1e-66 256.5 245 57.1
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 2.8e-66 256.1 224 61.2
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.8e-66 256.1 211 64.0
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.6e-66 255.8 224 61.2
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 4.7e-66 255.4 219 61.6
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 4.7e-66 255.4 154 78.6
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 6.1e-66 255.0 179 70.9
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.0e-65 254.2 230 60.9
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.0e-65 254.2 248 57.7
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 1.4e-65 253.8 247 58.3
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 1.4e-65 253.8 247 58.3
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.4e-65 253.8 225 60.4
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 6.8e-65 251.5 258 57.0
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 8.9e-65 251.1 235 60.9
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.0e-64 250.0 225 60.4
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 2.6e-64 249.6 208 63.0
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.7e-63 246.9 247 56.3
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.7e-63 246.9 213 60.6
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.7e-63 246.9 154 76.0
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 8.3e-63 244.6 222 59.0
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.1e-62 244.2 195 65.1
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.9e-62 243.4 246 56.1
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.2e-62 242.7 276 52.2
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 5.4e-62 241.9 244 56.6
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 5.4e-62 241.9 233 54.5
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.2e-61 240.7 224 60.7
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 3.5e-61 239.2 231 56.3
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 7.8e-61 238.0 226 56.2
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 7.8e-61 238.0 204 61.3
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 6.8e-57 224.9 151 70.9
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.5e-56 223.8 153 69.9
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 4.9e-55 218.8 153 71.2
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.4e-54 217.2 231 51.9
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 5.4e-54 215.3 211 57.3
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 6.6e-52 208.4 134 73.1
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 4.3e-51 205.7 149 68.5
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 5.2e-49 198.7 217 54.8
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 3.9e-44 182.6 212 49.1
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.5e-43 180.6 181 54.1
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 2.5e-43 179.9 192 52.6
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 3.3e-43 179.5 217 48.4
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 4.3e-43 179.1 166 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 1.6e-42 177.2 138 62.3
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.7e-42 175.6 230 44.8
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.6e-40 169.9 152 56.6
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 8.4e-39 164.9 114 70.2
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 3.2e-38 162.9 135 58.5
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 4.2e-38 162.5 137 55.5
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 8.1e-34 148.3 136 55.1
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.9e-33 145.2 99 77.8
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 5.8e-32 142.1 177 47.5
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 8.4e-31 138.3 134 57.5
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 4.2e-30 136.0 98 70.4
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 6.0e-29 132.1 68 83.8
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.6e-21 107.5 54 81.5
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 5.6e-19 99.0 114 51.8
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 3.7e-18 96.3 73 68.5
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 4.8e-18 95.9 138 36.2
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 9.0e-17 91.7 54 79.6
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.0e-15 88.2 98 48.0
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.4e-09 67.8 129 31.0
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 4.1e-09 66.2 36 77.8
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 9.0e-09 65.1 216 28.7
Atru.chr1.3684 Acer truncatum HOM05D005904 ORTHO05D007074 1.3e-07 61.2 75 48.0
Atru.chr1.3690 Acer truncatum HOM05D005904 ORTHO05D007074 1.1e-06 58.2 95 43.2


User provided reference genes

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