Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.1e-145 520.0 267 100.0
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 5.5e-134 481.1 266 90.6
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.0e-131 472.6 267 87.6
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.6e-131 472.2 267 88.8
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 9.8e-131 470.3 268 88.8
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.7e-130 469.5 267 88.0
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 8.3e-130 467.2 267 88.0
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 2.4e-129 465.7 267 87.6
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 3.1e-129 465.3 267 87.3
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 7.0e-129 464.2 267 86.5
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 4.5e-128 461.5 267 86.5
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 5.9e-128 461.1 267 86.1
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 3.8e-127 458.4 267 87.3
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.0e-127 458.0 267 86.5
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.0e-127 458.0 267 85.8
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 5.0e-127 458.0 268 87.3
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 5.0e-127 458.0 267 87.3
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 6.5e-127 457.6 267 86.5
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.1e-126 456.8 267 86.1
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.1e-126 456.8 267 86.1
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.5e-126 455.7 264 87.1
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 2.5e-126 455.7 267 86.5
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 3.2e-126 455.3 267 86.9
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 4.2e-126 454.9 267 85.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.2e-126 454.9 267 85.4
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.6e-125 453.0 262 86.3
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.7e-125 452.2 267 86.1
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 4.7e-125 451.4 267 87.3
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.7e-125 451.4 267 85.8
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.7e-125 451.4 267 85.8
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 4.7e-125 451.4 267 84.6
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 4.7e-125 451.4 267 84.6
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.0e-124 450.3 261 85.8
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 1.4e-124 449.9 267 83.5
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.4e-124 449.9 267 85.4
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.8e-124 449.5 268 85.4
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 3.0e-124 448.7 267 84.3
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.0e-124 448.7 265 86.0
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 5.2e-124 448.0 263 85.2
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 5.7e-123 444.5 266 84.6
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 9.8e-123 443.7 268 83.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.2e-122 442.6 265 83.4
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.2e-122 442.6 267 84.6
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 4.9e-122 441.4 268 84.3
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.3e-122 440.7 262 83.2
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 8.3e-122 440.7 315 74.3
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.1e-121 440.3 264 82.6
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.4e-121 439.9 261 83.5
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.4e-121 439.9 267 83.1
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.8e-121 439.5 264 82.6
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 2.4e-121 439.1 268 85.4
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.4e-121 439.1 274 81.4
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 4.1e-121 438.3 267 83.1
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 4.1e-121 438.3 267 81.3
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.0e-121 437.6 267 83.9
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.6e-120 436.4 267 82.4
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.6e-120 436.4 262 82.4
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.5e-120 434.9 255 86.7
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.9e-120 434.5 269 81.4
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 7.7e-120 434.1 267 83.5
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.0e-119 433.7 264 81.8
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 2.9e-119 432.2 275 81.8
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.8e-119 431.8 267 82.8
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 8.6e-119 430.6 267 81.6
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.1e-118 430.3 268 82.8
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.9e-118 429.5 270 83.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 4.2e-118 428.3 270 80.7
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.2e-118 427.6 267 80.9
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 6.1e-117 424.5 251 84.5
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.0e-116 423.7 268 82.8
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.8e-116 422.9 262 80.9
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.3e-116 422.5 267 80.5
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.0e-116 421.8 268 80.2
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 4.0e-116 421.8 260 83.5
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 5.2e-116 421.4 267 80.1
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 5.2e-116 421.4 308 73.7
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.5e-115 419.9 294 75.5
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.6e-115 419.1 255 83.9
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 4.4e-115 418.3 261 80.8
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.5e-115 417.5 264 79.2
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 3.7e-114 415.2 250 83.2
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.9e-114 414.8 267 79.4
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 6.3e-114 414.5 238 86.1
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 8.3e-114 414.1 291 75.6
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 8.3e-114 414.1 265 79.6
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.4e-113 413.3 264 78.8
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.8e-113 412.9 264 78.4
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 3.5e-112 408.7 267 76.8
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 3.5e-112 408.7 267 78.7
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.6e-112 408.3 250 81.2
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 4.6e-112 408.3 267 78.3
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 4.6e-112 408.3 264 77.7
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 7.8e-112 407.5 320 69.4
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 7.8e-112 407.5 254 79.1
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 8.6e-111 404.1 262 77.1
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.1e-110 403.7 259 79.2
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.9e-110 402.9 264 77.7
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 2.5e-110 402.5 280 76.1
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-109 400.2 269 77.3
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 5.2e-108 394.8 262 78.2
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.5e-107 393.3 270 74.8
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.6e-107 392.5 250 80.0
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 9.8e-107 390.6 284 74.3
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.7e-106 388.7 257 76.3
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.7e-106 388.7 257 76.3
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.9e-105 386.3 260 76.5
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 7.0e-105 384.4 252 78.6
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.6e-104 383.3 275 73.8
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.7e-104 382.5 268 72.8
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 2.3e-103 379.4 256 76.2
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.9e-103 378.6 265 73.2
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 8.6e-103 377.5 268 75.0
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 4.3e-102 375.2 268 71.6
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.1e-101 372.9 266 72.6
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 4.7e-101 371.7 257 74.7
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.2e-99 367.1 265 72.5
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.5e-99 366.7 262 72.5
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.0e-99 366.3 262 72.5
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.8e-99 364.8 227 81.5
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 7.5e-99 364.4 262 72.9
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 7.5e-99 364.4 262 72.9
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.7e-98 363.2 262 71.8
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 2.9e-98 362.5 257 73.9
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 4.9e-98 361.7 262 72.1
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 8.3e-98 360.9 262 71.8
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.4e-97 359.4 262 70.6
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 2.4e-97 359.4 267 72.7
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.4e-97 358.2 262 71.4
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.6e-96 356.7 264 70.8
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 2.1e-96 356.3 262 70.2
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.1e-96 356.3 260 72.3
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.6e-96 355.1 262 70.6
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 6.0e-96 354.8 262 71.4
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.0e-95 354.0 281 68.7
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.3e-94 349.0 253 70.8
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 5.6e-94 348.2 235 74.9
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 3.6e-93 345.5 262 69.8
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 3.1e-92 342.4 206 85.9
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 6.8e-92 341.3 262 69.8
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 3.2e-89 332.4 199 83.9
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 3.5e-88 328.9 265 67.2
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 2.8e-85 319.3 263 64.3
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 4.7e-85 318.5 266 64.7
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 2.0e-83 313.2 263 63.5
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 6.4e-82 308.1 223 72.2
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.9e-81 306.6 241 69.3
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 2.4e-81 306.2 266 62.4
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 2.3e-79 299.7 260 62.7
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 8.7e-79 297.7 191 80.1
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 7.3e-78 294.7 259 61.0
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-73 280.8 174 82.8
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.7e-71 271.2 144 91.0
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 9.0e-44 181.4 212 51.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.1e-41 174.5 243 44.9
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.3e-39 166.8 121 73.6
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 8.8e-39 164.9 117 73.5
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.0e-38 163.7 262 39.3
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.3e-38 162.9 206 48.1
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.5e-30 137.5 93 73.1
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.7e-30 134.8 74 90.5
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.7e-26 124.0 89 70.8
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 7.2e-25 118.6 247 35.2
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 7.0e-20 102.1 174 40.8
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 5.0e-18 95.9 117 44.4
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.2e-16 91.3 92 54.3
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.1e-12 78.2 41 82.9
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 2.4e-12 77.0 128 46.1
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.1e-12 76.3 41 80.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.5e-11 73.2 40 82.5
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 7.7e-11 72.0 43 72.1
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 1.8e-07 60.8 138 34.1
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 2.3e-07 60.5 86 36.0


User provided reference genes

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