Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 7.5e-211 736.9 358 100.0
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 1.6e-157 559.7 368 74.2
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 1.2e-152 543.5 368 72.6
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 5.3e-148 528.1 367 70.6
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 5.1e-143 511.5 371 69.0
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.5e-139 500.0 380 65.5
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 2.9e-138 495.7 375 65.1
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 8.5e-138 494.2 323 72.1
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.7e-136 489.2 374 64.7
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 4.3e-134 481.9 335 69.6
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.3e-133 480.3 361 66.8
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 3.1e-132 475.7 351 66.4
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 3.4e-131 472.2 351 66.1
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 1.0e-130 470.7 368 62.8
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 1.3e-130 470.3 369 64.2
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 2.2e-130 469.5 373 63.0
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 2.2e-130 469.5 373 63.0
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 2.9e-130 469.2 333 68.5
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 2.9e-130 469.2 333 68.5
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 5.0e-130 468.4 348 65.8
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 8.5e-130 467.6 332 67.5
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 4.7e-128 461.8 352 64.8
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 7.9e-128 461.1 357 62.5
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 1.0e-127 460.7 328 67.1
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.0e-127 460.7 344 64.2
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 2.3e-127 459.5 343 65.6
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 5.1e-127 458.4 327 69.4
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 6.7e-127 458.0 359 63.8
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 8.8e-127 457.6 367 62.1
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 1.1e-126 457.2 351 65.5
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 1.5e-126 456.8 369 61.8
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 1.5e-126 456.8 354 65.3
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 2.0e-126 456.4 340 66.8
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 4.4e-126 455.3 336 67.6
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 5.7e-126 454.9 304 72.0
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 5.7e-126 454.9 358 62.0
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 7.4e-126 454.5 288 75.7
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 1.3e-125 453.8 343 64.7
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 2.2e-125 453.0 334 65.9
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 4.8e-125 451.8 369 61.0
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 4.8e-125 451.8 343 63.8
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 8.2e-125 451.1 343 64.4
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 1.1e-124 450.7 327 67.0
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 1.8e-124 449.9 336 64.3
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 7.7e-123 444.5 342 63.5
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.7e-122 443.4 335 66.3
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 3.8e-122 442.2 333 65.8
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 6.5e-122 441.4 339 64.6
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 6.5e-122 441.4 327 64.8
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 9.4e-121 437.6 312 67.0
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 4.7e-120 435.3 341 62.2
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 1.1e-118 430.6 327 63.9
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 1.5e-118 430.3 348 60.1
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 1.5e-118 430.3 324 64.5
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 3.3e-118 429.1 324 63.9
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 4.4e-118 428.7 336 63.4
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 3.7e-117 425.6 290 70.3
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 6.3e-117 424.9 341 61.3
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.1e-116 424.1 332 63.3
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 4.1e-116 422.2 323 65.3
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 4.5e-115 418.7 361 58.4
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 1.0e-114 417.5 362 58.3
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 5.0e-114 415.2 338 62.4
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.5e-113 413.7 367 56.4
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 1.5e-113 413.7 338 62.4
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 2.5e-113 412.9 335 60.9
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 3.2e-113 412.5 336 61.0
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 3.2e-113 412.5 336 61.0
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 4.2e-113 412.1 333 61.6
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 5.5e-113 411.8 335 59.4
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 2.1e-112 409.8 321 61.7
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 2.7e-112 409.5 356 56.7
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 3.6e-112 409.1 351 59.0
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 6.1e-112 408.3 283 67.5
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 1.0e-111 407.5 323 60.4
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 2.3e-111 406.4 324 60.8
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 3.0e-111 406.0 357 59.1
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 1.2e-110 404.1 337 58.8
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 1.5e-110 403.7 350 57.7
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 1.5e-110 403.7 316 61.7
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 2.6e-110 402.9 337 59.6
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 3.3e-110 402.5 362 57.7
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 3.3e-110 402.5 344 58.4
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 4.4e-110 402.1 331 60.4
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 4.4e-110 402.1 290 66.9
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 3.7e-109 399.1 346 58.7
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 1.1e-108 397.5 346 58.7
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 1.2e-107 394.0 341 57.5
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 4.7e-104 382.1 258 72.5
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 2.3e-103 379.8 244 74.2
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 3.0e-103 379.4 316 61.1
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 9.8e-102 374.4 361 55.4
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 8.3e-101 371.3 335 58.2
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 3.3e-97 359.4 330 56.7
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 6.8e-95 351.7 369 53.4
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 5.6e-89 332.0 240 68.8
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 5.2e-87 325.5 265 60.8
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 8.9e-87 324.7 295 52.5
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 2.0e-83 313.5 326 49.4
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 9.5e-81 304.7 262 59.5
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 5.2e-79 298.9 317 52.4
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 7.5e-78 295.0 248 61.3
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 1.3e-77 294.3 362 45.6
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 4.1e-76 289.3 323 46.7
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 1.3e-74 284.3 253 58.9
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 6.2e-72 275.4 445 36.2
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 3.1e-71 273.1 445 37.3
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 3.1e-71 273.1 227 60.8
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 6.8e-71 271.9 341 46.6
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 8.9e-71 271.6 346 46.5
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 3.7e-69 266.2 345 43.5
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 5.6e-65 252.3 190 66.3
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 7.3e-57 225.3 420 33.1
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 5.4e-52 209.1 184 60.3
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 4.6e-51 206.1 159 60.4
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 7.3e-49 198.7 121 75.2
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 3.6e-48 196.4 153 65.4
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 1.8e-47 194.1 123 75.6
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 2.0e-46 190.7 417 33.1
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 1.4e-39 167.9 249 40.2
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 2.6e-38 163.7 106 75.5
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 3.4e-38 163.3 408 31.1
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 6.4e-37 159.1 140 54.3
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 1.1e-36 158.3 121 59.5
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 2.9e-29 133.7 79 75.9
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 9.3e-28 128.6 116 59.5
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 6.0e-27 125.9 122 49.2
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 5.0e-21 106.3 63 77.8
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-20 105.1 71 69.0
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 2.6e-09 67.4 109 37.6
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 8.2e-08 62.4 55 56.4
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 1.2e-06 58.5 185 28.1
PSO675G4619 Papaver somniferum HOM05D000047 ORTHO05D000044 2.0e-06 57.8 109 33.0


User provided reference genes

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