Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 3.2e-276 954.5 502 100.0
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 6.5e-269 930.2 502 98.0
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.8e-133 478.0 510 53.7
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 2.0e-132 476.9 512 56.1
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.4e-130 469.9 514 53.3
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 4.1e-130 469.2 510 54.5
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.0e-128 464.5 506 55.5
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.8e-123 446.4 516 52.7
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 8.2e-123 444.9 507 52.9
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 8.2e-123 444.9 507 51.9
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.4e-122 443.4 535 50.8
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 5.3e-122 442.2 518 52.9
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.5e-121 439.1 533 50.3
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 4.5e-121 439.1 511 52.3
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 5.9e-121 438.7 518 52.1
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.5e-119 434.1 507 50.9
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.5e-119 434.1 510 51.2
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.2e-119 432.6 510 51.0
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.1e-118 430.3 511 51.7
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 8.0e-118 428.3 505 49.9
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 8.0e-118 428.3 510 49.0
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.4e-117 427.6 504 51.2
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.3e-117 426.8 508 49.4
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 5.2e-117 425.6 514 49.8
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 8.8e-117 424.9 533 47.8
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.5e-116 424.1 547 51.0
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 4.4e-116 422.5 503 49.1
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 5.7e-116 422.2 512 51.2
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 7.5e-116 421.8 527 48.4
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 7.5e-116 421.8 527 48.4
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 9.8e-116 421.4 504 49.6
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.3e-115 421.0 506 51.4
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 3.7e-115 419.5 515 48.5
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 4.8e-115 419.1 505 48.5
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 5.4e-114 415.6 511 51.1
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 7.0e-114 415.2 504 49.4
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.0e-114 415.2 510 50.8
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 7.0e-114 415.2 506 47.8
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 9.1e-114 414.8 508 50.0
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.2e-113 414.5 506 49.6
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.6e-113 414.1 512 49.2
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.6e-113 414.1 510 50.6
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.6e-113 414.1 505 50.5
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 4.5e-113 412.5 508 49.0
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.7e-112 410.6 510 50.6
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.3e-112 410.2 518 49.4
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 2.9e-112 409.8 506 48.8
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 3.8e-112 409.5 508 49.4
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 6.6e-112 408.7 504 48.6
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.6e-112 408.7 510 50.2
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 6.6e-112 408.7 511 49.9
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 6.6e-112 408.7 518 49.2
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.3e-111 406.4 502 47.8
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 9.5e-111 404.8 506 48.8
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.6e-110 402.9 508 47.6
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.6e-110 402.9 517 47.6
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.7e-110 402.5 503 48.9
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.0e-109 401.4 503 47.9
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.5e-108 397.5 509 47.5
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.5e-108 397.5 504 49.8
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 2.0e-108 397.1 528 46.6
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.6e-108 396.7 504 48.2
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 8.3e-107 391.7 506 51.0
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.7e-105 386.7 502 48.2
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 4.5e-105 386.0 502 48.2
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.7e-104 384.0 507 46.7
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.7e-104 384.0 502 47.6
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.7e-104 384.0 502 47.6
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.9e-104 383.3 504 46.2
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.9e-104 383.3 528 44.9
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 2.9e-104 383.3 433 53.6
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 8.6e-104 381.7 429 50.3
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 8.6e-104 381.7 429 50.3
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.9e-103 380.6 505 47.1
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.2e-102 377.9 510 45.5
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.6e-102 377.5 503 46.5
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.2e-100 371.3 505 47.5
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 2.6e-100 370.2 504 46.2
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 3.4e-100 369.8 486 47.5
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.7e-99 367.5 536 43.1
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 8.3e-99 365.2 504 45.6
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.1e-98 364.8 536 42.5
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.4e-98 364.4 515 44.1
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 5.4e-98 362.5 501 44.3
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 3.5e-97 359.8 429 49.4
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 5.0e-96 355.9 521 44.1
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 5.0e-96 355.9 504 47.2
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.5e-95 354.4 509 45.0
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.9e-95 354.0 352 55.7
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.9e-95 354.0 485 44.3
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 5.6e-95 352.4 508 42.5
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.8e-94 350.1 501 43.7
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 3.6e-94 349.7 524 43.9
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.1e-93 348.2 514 44.4
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.4e-93 347.8 402 49.8
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.4e-93 347.8 397 50.1
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 3.1e-93 346.7 505 43.4
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-92 344.4 469 45.6
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.5e-87 327.8 505 42.4
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.4e-85 321.2 566 38.0
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.9e-85 318.5 472 42.8
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 3.2e-82 310.1 486 42.8
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.0e-80 303.5 500 40.6
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 5.6e-79 299.3 504 40.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.1e-77 295.0 504 41.3
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 8.9e-77 292.0 506 40.1
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 2.6e-76 290.4 425 44.5
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 9.9e-76 288.5 502 39.6
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 7.1e-74 282.3 502 37.6
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 7.3e-71 272.3 504 37.7
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 9.6e-71 271.9 370 44.9
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 3.1e-69 266.9 426 43.0
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 4.0e-69 266.5 508 37.6
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.0e-64 251.9 337 45.1
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.6e-62 244.6 516 36.0
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.9e-59 233.8 498 37.3
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.9e-58 231.1 518 34.9
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 2.3e-56 224.2 739 27.6
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 3.3e-55 220.3 514 32.5
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.3e-55 219.9 473 33.6
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.1e-53 215.3 224 52.2
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.8e-53 214.5 444 34.7
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 3.4e-52 210.3 366 37.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.6e-47 193.0 224 50.0
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.0e-45 185.7 224 50.0
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.3e-43 181.8 673 27.6
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.1e-39 168.7 361 36.3
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.9e-39 167.9 225 46.2
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 3.7e-38 163.7 480 27.5
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 6.9e-37 159.5 411 32.1
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 7.9e-33 146.0 222 45.5
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 3.9e-32 143.7 227 42.3
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 9.7e-31 139.0 630 23.5
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 2.4e-29 134.4 622 24.0
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.9e-29 132.9 240 36.7
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.5e-23 115.2 221 35.3
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.4e-21 108.6 82 65.9
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 1.2e-20 105.5 121 45.5
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 2.2e-19 101.3 96 54.2
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 5.0e-19 100.1 530 23.4
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 8.5e-19 99.4 74 56.8
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 1.9e-18 98.2 223 35.0
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 2.7e-17 94.4 191 36.6
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 3.6e-17 94.0 159 40.3
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 6.1e-17 93.2 136 39.7
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 3.9e-16 90.5 578 23.4
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.0e-15 88.2 310 25.5
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 2.6e-15 87.8 243 29.6
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.3e-15 87.4 86 44.2
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.3e-14 85.5 237 31.2
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 8.2e-14 82.8 156 34.6
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.0e-12 78.2 187 28.3
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 3.0e-08 64.3 46 58.7
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 6.8e-08 63.2 102 42.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 4.4e-07 60.5 118 40.7
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 5.7e-07 60.1 94 34.0
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 3.7e-06 57.4 116 33.6
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 4.8e-06 57.0 123 38.2
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 4.8e-06 57.0 99 34.3
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 6.3e-06 56.6 236 26.7


User provided reference genes

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