Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 3.2e-130 468.4 232 100.0
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.5e-106 389.8 226 81.0
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 2.1e-105 386.0 226 80.1
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 4.7e-105 384.8 232 81.0
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 4.7e-105 384.8 226 80.5
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 4.7e-105 384.8 226 80.5
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 4.4e-103 378.3 230 78.7
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.3e-102 376.7 233 79.0
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.2e-102 375.9 226 77.9
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.2e-102 375.9 226 77.9
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.2e-102 375.9 226 78.3
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.8e-102 375.6 225 76.9
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 2.8e-102 375.6 232 79.3
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 3.7e-102 375.2 232 78.9
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.8e-101 372.9 228 76.8
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 2.4e-101 372.5 232 76.3
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 3.1e-101 372.1 226 77.9
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.0e-101 370.9 227 79.7
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.6e-100 369.8 227 79.3
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 2.0e-100 369.4 232 77.6
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 2.0e-100 369.4 232 78.0
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 4.5e-100 368.2 234 76.1
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 5.9e-100 367.9 232 76.3
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.0e-99 367.1 234 75.6
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.7e-99 366.3 225 76.9
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.3e-99 365.9 230 75.2
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 2.9e-99 365.5 228 76.3
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 5.0e-99 364.8 234 75.2
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 5.0e-99 364.8 233 76.4
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 6.5e-99 364.4 232 77.6
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 1.5e-98 363.2 233 75.5
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.2e-98 361.7 227 77.1
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 4.2e-98 361.7 233 76.4
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 5.5e-98 361.3 232 74.6
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 5.5e-98 361.3 227 74.4
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 7.2e-98 360.9 232 75.0
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.5e-98 360.5 232 75.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.2e-97 360.1 233 75.5
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.7e-97 358.2 232 74.6
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.0e-96 357.1 236 77.1
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.0e-96 357.1 236 77.1
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 2.3e-96 355.9 226 75.7
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.0e-96 355.5 233 75.5
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 5.2e-96 354.8 233 73.8
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 8.8e-96 354.0 232 74.1
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.2e-95 353.6 233 74.2
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.5e-95 353.2 233 73.8
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 2.0e-95 352.8 232 74.6
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 3.4e-95 352.1 255 69.8
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 3.4e-95 352.1 233 73.8
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 4.4e-95 351.7 230 72.6
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 5.7e-95 351.3 232 72.8
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-94 350.1 236 75.8
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.7e-94 348.6 247 69.2
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.7e-94 348.6 233 74.2
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 8.3e-94 347.4 249 72.7
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.1e-93 347.1 233 74.2
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.1e-93 347.1 233 73.8
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.4e-93 346.7 233 73.8
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.4e-93 345.9 233 73.4
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 2.4e-93 345.9 232 71.6
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.1e-93 345.5 247 68.8
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 3.1e-93 345.5 237 71.7
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 4.1e-93 345.1 224 73.2
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 4.1e-93 345.1 224 73.2
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.1e-93 345.1 233 73.8
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 7.0e-93 344.4 226 72.6
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.2e-92 343.6 233 73.4
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 2.0e-92 342.8 215 76.3
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 2.7e-92 342.4 233 74.2
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.0e-91 340.5 228 73.7
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.3e-91 340.1 233 72.1
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.3e-91 339.3 233 69.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.0e-91 338.2 220 73.6
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 5.0e-91 338.2 230 70.4
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 5.0e-91 338.2 239 69.0
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.6e-91 337.4 233 72.1
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 1.1e-90 337.0 234 69.7
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.1e-90 337.0 230 70.0
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.1e-90 337.0 234 70.1
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.1e-90 337.0 231 70.6
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.9e-90 336.3 236 69.1
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.9e-90 336.3 235 69.4
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 2.5e-90 335.9 231 71.4
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 3.3e-90 335.5 214 73.4
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 4.3e-90 335.1 234 70.1
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 7.3e-90 334.3 233 68.7
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.8e-89 332.4 239 68.6
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.8e-89 332.4 236 68.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 3.6e-89 332.0 237 67.9
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.6e-89 332.0 229 69.9
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 8.0e-89 330.9 234 67.9
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 8.0e-89 330.9 233 68.7
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.0e-88 330.5 228 68.9
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.4e-88 330.1 232 67.7
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.0e-88 328.6 214 71.5
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.2e-88 328.2 227 71.8
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 6.8e-88 327.8 236 67.4
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 6.8e-88 327.8 236 67.4
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 6.8e-88 327.8 236 70.8
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 8.9e-88 327.4 234 68.4
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.2e-87 327.0 236 67.4
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.2e-87 327.0 210 73.3
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.5e-87 326.6 233 67.4
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 4.4e-87 325.1 232 69.8
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 7.5e-87 324.3 228 68.9
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.4e-85 320.1 235 67.7
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.4e-85 320.1 235 67.7
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 2.4e-85 319.3 214 72.9
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.4e-85 319.3 236 69.1
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 3.2e-85 318.9 234 67.1
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 5.4e-85 318.2 275 59.6
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.0e-84 316.2 214 69.6
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 2.0e-84 316.2 233 68.7
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 3.9e-83 312.0 234 65.0
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 6.6e-83 311.2 232 66.8
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.1e-82 310.5 213 68.5
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 2.1e-81 306.2 242 63.6
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.1e-80 303.9 232 65.1
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 2.0e-79 299.7 237 63.7
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.4e-79 298.9 227 67.8
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.9e-77 293.1 212 66.0
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.9e-75 285.4 180 75.0
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-74 283.9 184 74.5
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 9.5e-74 280.8 185 73.5
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 4.7e-73 278.5 236 63.1
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 6.4e-70 268.1 212 62.3
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.2e-68 263.8 232 59.9
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.3e-66 255.4 162 77.2
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 4.3e-66 255.4 229 58.5
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 7.3e-66 254.6 217 54.8
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.1e-64 250.8 157 75.2
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.4e-64 249.6 159 73.6
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 7.1e-61 238.0 192 64.6
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.1e-58 230.7 145 78.6
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.5e-55 220.3 187 62.6
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 6.0e-52 208.4 226 48.7
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 7.8e-52 208.0 186 60.2
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 3.3e-50 202.6 211 47.9
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 3.6e-49 199.1 213 49.8
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.8e-48 196.8 213 49.3
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.1e-45 187.6 185 54.6
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.1e-45 184.9 120 72.5
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 3.5e-44 182.6 132 63.6
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 3.2e-37 159.5 158 55.1
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.6e-36 157.1 92 79.3
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.8e-35 153.7 225 45.3
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.3e-35 153.3 197 43.7
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 5.6e-34 148.7 99 69.7
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.0e-30 137.9 152 48.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.6e-28 130.6 214 36.9
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 5.3e-24 115.5 105 58.1
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 4.5e-23 112.5 202 31.7
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 8.5e-22 108.2 90 58.9
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.5e-22 108.2 87 64.4
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 3.2e-21 106.3 73 71.2
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.2e-20 104.4 67 74.6
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.1e-20 102.1 74 67.6
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-19 100.5 73 68.5
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-19 100.1 74 66.2
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 5.1e-19 99.0 70 71.4
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 4.3e-18 95.9 74 67.6
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 9.1e-16 88.2 107 40.2
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-14 84.7 69 63.8
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 3.2e-13 79.7 209 29.2
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 2.3e-11 73.6 140 35.7
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 8.8e-11 71.6 53 69.8
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 3.1e-08 63.2 52 67.3
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 2.6e-07 60.1 39 74.4
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 2.6e-07 60.1 37 70.3
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.6e-07 60.1 53 64.2
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 1.3e-06 57.8 57 49.1


User provided reference genes

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