Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1101 Cannabis sativa HOM05D015079 ORTHO05D000167 4.4e-92 341.3 171 100.0
CANSAT56G0228 Cannabis sativa HOM05D015079 ORTHO05D000167 7.0e-82 307.4 171 90.6
CANSAT25G2738 Cannabis sativa HOM05D015079 ORTHO05D000167 1.7e-80 302.8 157 96.8
CANSAT21G2489 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-67 260.0 171 73.7
CANSAT25G1545 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-44 181.0 169 56.2
CANSAT35G1823 Cannabis sativa HOM05D000003 ORTHO05D000004 9.9e-44 180.6 171 56.1
CANSAT54G0106 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-43 178.7 167 55.7
CANSAT11G1492 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-40 168.3 145 55.9
CANSAT64G0879 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-39 166.4 171 54.4
CANSAT35G1614 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-39 165.2 168 50.6
CANSAT78G2184 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-39 164.9 87 92.0
CANSAT56G3861 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-38 162.5 148 54.7
CANSAT25G0061 Cannabis sativa HOM05D015079 ORTHO05D000167 6.4e-35 151.4 143 54.5
CANSAT80G1973 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-34 150.2 142 50.7
CANSAT25G1547 Cannabis sativa HOM05D015079 ORTHO05D000167 4.2e-34 148.7 140 52.1
CANSAT11G0676 Cannabis sativa HOM05D015079 ORTHO05D000167 9.3e-34 147.5 140 52.1
CANSAT80G2194 Cannabis sativa HOM05D015079 ORTHO05D000167 1.2e-33 147.1 149 49.0
CANSAT11G1324 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-32 142.9 134 56.0
CANSAT56G1996 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-31 140.6 161 45.3
CANSAT01G3235 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-31 139.4 161 47.8
CANSAT35G1852 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-28 129.8 169 42.0
CANSAT01G1233 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-28 129.0 114 55.3
CANSAT80G0722 Cannabis sativa HOM05D000003 ORTHO05D000004 6.4e-27 124.8 140 50.0
CANSAT35G0410 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-26 123.2 142 43.7
CANSAT64G2041 Cannabis sativa HOM05D015079 ORTHO05D000167 1.5e-23 113.6 135 46.7
CANSAT56G3747 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-20 103.6 146 36.3
CANSAT80G0283 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-20 103.6 142 38.7
CANSAT80G1791 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-20 101.3 167 34.1
CANSAT01G2496 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-19 100.9 147 34.0
CANSAT54G2929 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-18 97.4 144 32.6
CANSAT35G1518 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-18 97.1 172 33.7
CANSAT54G2709 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-18 97.1 170 37.1
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-18 96.7 160 35.0
CANSAT25G3483 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-18 96.3 135 33.3
CANSAT80G2229 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-18 96.3 143 36.4
CANSAT56G0342 Cannabis sativa HOM05D000003 ORTHO05D000167 4.2e-18 95.5 145 35.9
CANSAT56G4495 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-18 95.5 119 42.9
CANSAT35G1830 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-18 95.1 144 34.7
CANSAT01G3112 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-18 94.7 140 35.7
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 9.3e-18 94.4 141 34.0
CANSAT01G0512 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-17 93.6 141 33.3
CANSAT80G2437 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-17 93.6 137 34.3
CANSAT01G1430 Cannabis sativa HOM05D000003 ORTHO05D000167 2.1e-17 93.2 140 35.0
CANSAT64G1526 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-17 93.2 136 33.8
CANSAT11G2485 Cannabis sativa HOM05D000003 ORTHO05D000167 3.5e-17 92.4 142 33.1
CANSAT64G1247 Cannabis sativa HOM05D000003 ORTHO05D000167 3.5e-17 92.4 136 34.6
CANSAT11G0632 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-17 92.0 144 32.6
CANSAT25G1542 Cannabis sativa HOM05D000003 ORTHO05D000167 4.6e-17 92.0 144 32.6
CANSAT35G0288 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-17 92.0 165 32.7
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-17 91.3 143 34.3
CANSAT35G0498 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-17 91.3 163 31.9
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-16 90.9 159 32.7
CANSAT25G3224 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-16 90.9 140 32.1
CANSAT01G1968 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-16 90.5 154 31.2
CANSAT21G0879 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-16 90.5 143 31.5
CANSAT21G1817 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-16 90.5 125 35.2
CANSAT25G0932 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-16 90.5 58 82.8
CANSAT78G2161 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-16 90.5 135 33.3
CANSAT21G2622 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-16 90.1 140 35.0
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-16 90.1 161 30.4
CANSAT64G2042 Cannabis sativa HOM05D000003 ORTHO05D000167 5.1e-16 88.6 143 33.6
CANSAT25G2392 Cannabis sativa HOM05D000003 ORTHO05D000004 6.7e-16 88.2 139 33.1
CANSAT01G1630 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-15 87.4 142 30.3
CANSAT25G1531 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-15 87.4 136 33.8
CANSAT80G1620 Cannabis sativa HOM05D015079 ORTHO05D000167 1.5e-15 87.0 106 50.0
CANSAT21G2476 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-15 86.7 122 34.4
CANSAT35G0981 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-15 86.7 130 32.3
CANSAT64G1529 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-15 86.7 131 32.1
CANSAT64G2594 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-15 86.7 122 33.6
CANSAT78G0786 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-15 86.7 141 34.8
CANSAT78G1435 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-15 86.3 141 34.0
CANSAT64G2141 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-15 85.5 142 30.3
CANSAT78G1465 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-15 85.1 128 33.6
CANSAT01G2953 Cannabis sativa HOM05D000003 ORTHO05D000004 7.4e-15 84.7 170 32.4
CANSAT80G0814 Cannabis sativa HOM05D000003 ORTHO05D000004 9.6e-15 84.3 141 34.0
CANSAT21G1369 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-14 83.6 141 34.0
CANSAT25G0454 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-14 83.6 164 29.3
CANSAT25G0727 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-14 83.6 134 35.8
CANSAT80G1457 Cannabis sativa HOM05D000003 ORTHO05D000167 3.7e-14 82.4 139 34.5
CANSAT37G0018 Cannabis sativa HOM05D000003 ORTHO05D000167 6.2e-14 81.6 135 33.3
CANSAT54G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-14 81.6 172 29.1
CANSAT54G0661 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-13 80.5 164 31.7
CANSAT64G1471 Cannabis sativa HOM05D000003 ORTHO05D000167 2.4e-13 79.7 149 31.5
CANSAT78G1659 Cannabis sativa HOM05D000003 ORTHO05D000167 2.4e-13 79.7 125 32.0
CANSAT35G0664 Cannabis sativa HOM05D000003 ORTHO05D000167 3.1e-13 79.3 141 29.8
CANSAT11G1907 Cannabis sativa HOM05D000003 ORTHO05D000167 5.3e-13 78.6 177 27.7
CANSAT56G3043 Cannabis sativa HOM05D000003 ORTHO05D000167 5.3e-13 78.6 140 32.1
CANSAT80G2262 Cannabis sativa HOM05D000003 ORTHO05D000167 5.3e-13 78.6 124 31.5
CANSAT21G1936 Cannabis sativa HOM05D000003 ORTHO05D000004 6.9e-13 78.2 151 29.8
CANSAT78G2022 Cannabis sativa HOM05D000003 ORTHO05D000004 9.0e-13 77.8 169 28.4
CANSAT21G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-12 76.6 125 33.6
CANSAT80G0097 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-12 76.6 137 31.4
CANSAT78G0208 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-12 76.3 132 34.1
CANSAT78G0319 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-12 75.9 141 27.7
CANSAT01G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-12 75.5 128 34.4
CANSAT11G1145 Cannabis sativa HOM05D000003 ORTHO05D000167 4.5e-12 75.5 145 31.7
CANSAT80G1228 Cannabis sativa HOM05D000003 ORTHO05D000167 5.8e-12 75.1 166 28.3
CANSAT01G0149 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-12 74.7 64 65.6
CANSAT78G1893 Cannabis sativa HOM05D000003 ORTHO05D000167 7.6e-12 74.7 166 30.1
CANSAT80G2272 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-12 74.7 100 36.0
CANSAT64G1779 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-11 73.9 152 29.6
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-11 73.9 140 32.9
CANSAT35G0707 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-11 73.2 149 30.9
CANSAT64G1154 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-11 72.8 142 30.3
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-11 72.4 136 32.4
CANSAT56G2910 Cannabis sativa HOM05D000003 ORTHO05D000167 3.8e-11 72.4 132 32.6
CANSAT25G1672 Cannabis sativa HOM05D000003 ORTHO05D000167 5.0e-11 72.0 135 32.6
CANSAT56G0865 Cannabis sativa HOM05D000003 ORTHO05D000167 5.0e-11 72.0 159 30.2
CANSAT80G1428 Cannabis sativa HOM05D000003 ORTHO05D000167 5.0e-11 72.0 143 29.4
CANSAT25G0663 Cannabis sativa HOM05D000003 ORTHO05D000167 6.5e-11 71.6 138 30.4
CANSAT01G1560 Cannabis sativa HOM05D000003 ORTHO05D000167 8.4e-11 71.2 146 31.5
CANSAT11G0021 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-10 70.9 130 32.3
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-10 70.9 144 31.2
CANSAT64G2575 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-10 69.7 165 29.7
CANSAT11G0106 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-10 69.3 123 31.7
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-10 68.9 135 32.6
Atru.chr12.1232 Acer truncatum HOM05D000003 ORTHO05D000167 5.5e-10 68.6 135 30.4
CANSAT25G1039 Cannabis sativa HOM05D000033 ORTHO05D001317 9.3e-10 67.8 130 33.8
CANSAT78G1174 Cannabis sativa HOM05D000003 ORTHO05D000167 9.3e-10 67.8 129 31.0
Atru.chr10.362 Acer truncatum HOM05D000003 ORTHO05D000167 6.1e-09 65.1 159 28.9
Sed0001376 Sechium edule HOM05D000003 ORTHO05D000167 6.1e-09 65.1 163 30.1
CANSAT25G1682 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-08 64.3 130 31.5
CANSAT54G1158 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-08 64.3 108 34.3
Atru.chr1.3159 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-08 63.9 135 29.6
Atru.chr4.1036 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-08 63.9 140 28.6
CANSAT64G1068 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-08 63.9 113 31.0
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 1.3e-08 63.9 140 30.7
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-08 63.5 136 33.1
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-08 63.5 136 30.1
CANSAT56G0050 Cannabis sativa HOM05D000031 ORTHO05D000030 1.8e-08 63.5 138 28.3
CANSAT64G0505 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-08 63.5 143 28.0
RcHm_v2.0_Chr2g0109541 Rosa chinensis HOM05D009322 ORTHO05D010713 1.8e-08 63.5 122 33.6
Atru.chr6.1815 Acer truncatum HOM05D000003 ORTHO05D000167 2.3e-08 63.2 140 29.3
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-08 62.8 144 27.1
CiPaw.11G082900 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.0e-08 62.8 165 26.1
Atru.chr11.1957 Acer truncatum HOM05D000003 ORTHO05D000167 3.9e-08 62.4 159 26.4
Atru.chr6.1733 Acer truncatum HOM05D000003 ORTHO05D000167 3.9e-08 62.4 135 28.1
CANSAT11G0084 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-08 62.0 144 29.2
CANSAT80G2658 Cannabis sativa HOM05D000003 ORTHO05D000167 5.1e-08 62.0 134 32.1
Atru.chr11.542 Acer truncatum HOM05D000003 ORTHO05D000167 8.7e-08 61.2 135 27.4
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 8.7e-08 61.2 147 30.6
CANSAT56G0621 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-07 60.8 141 29.1
Atru.chr3.3369 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-07 60.1 135 27.4
Atru.chr5.1598 Acer truncatum HOM05D000856 ORTHO05D000167 1.9e-07 60.1 136 27.2
Atru.chr6.486 Acer truncatum HOM05D000003 ORTHO05D000167 2.5e-07 59.7 137 28.5
Atru.chr9.177 Acer truncatum HOM05D000003 ORTHO05D000167 2.5e-07 59.7 136 28.7
CANSAT01G1919 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-07 59.7 173 26.0
Atru.chr8.183 Acer truncatum HOM05D000003 ORTHO05D000167 3.3e-07 59.3 136 28.7
Atru.chr8.265 Acer truncatum HOM05D000003 ORTHO05D000167 3.3e-07 59.3 136 28.7
FvH4_1g24161 Fragaria vesca HOM05D022948 ORTHO05D014631 3.3e-07 59.3 107 28.0
Atru.chr8.486 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-07 58.9 126 28.6
Atru.chr4.686 Acer truncatum HOM05D000003 ORTHO05D000126 5.7e-07 58.5 161 26.1
CANSAT25G1269 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-07 58.5 155 24.5
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-07 58.5 146 27.4
RcHm_v2.0_Chr7g0229351 Rosa chinensis HOM05D009322 ORTHO05D010713 7.4e-07 58.2 136 25.7
Atru.chr2.1599 Acer truncatum HOM05D000003 ORTHO05D000167 9.7e-07 57.8 148 28.4
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 9.7e-07 57.8 163 25.8
Sed0015376 Sechium edule HOM05D000003 ORTHO05D000167 9.7e-07 57.8 145 29.7
Atru.chr6.748 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.4 140 30.7
CANSAT54G0625 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-06 57.4 42 52.4
Atru.chr5.1534 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-06 57.0 141 27.0
Atru.chr8.67 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-06 57.0 151 28.5
Sed0021352 Sechium edule HOM05D000003 ORTHO05D000167 1.6e-06 57.0 131 32.1
Atru.chr11.1423 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-06 56.6 136 29.4
Atru.chr3.1566 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-06 56.6 139 25.2
CANSAT25G3699 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-06 56.6 123 30.9
CANSAT35G0956 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-06 56.6 159 27.0
Haze_19825 Corylus avellana HOM05D009031 ORTHO05D000167 2.2e-06 56.6 111 28.8
CiPaw.10G104100 Carya illinoinensis HOM05D000003 ORTHO05D000167 2.8e-06 56.2 138 27.5
Haze_09308 Corylus avellana HOM05D001621 ORTHO05D000167 2.8e-06 56.2 112 32.1
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-06 55.8 142 26.1
Atru.chr8.1143 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-06 55.8 139 26.6
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 4.8e-06 55.5 145 29.0
CANSAT54G1575 Cannabis sativa HOM05D000003 ORTHO05D000004 4.8e-06 55.5 103 33.0
Lj5C171G21 Lonicera japonica HOM05D000003 ORTHO05D000167 6.3e-06 55.1 137 27.7
RcHm_v2.0_Chr4g0413301 Rosa chinensis HOM05D008833 ORTHO05D010662 6.3e-06 55.1 95 26.3
Atru.chr11.1421 Acer truncatum HOM05D000003 ORTHO05D000004 8.2e-06 54.7 143 27.3
RcHm_v2.0_Chr2g0147661 Rosa chinensis HOM05D000003 ORTHO05D010713 8.2e-06 54.7 137 29.9


User provided reference genes

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