Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1095 Cannabis sativa HOM05D006486 ORTHO05D007888 2.6e-159 565.5 309 100.0
Prupe.4G037000 Prunus persica HOM05D006486 ORTHO05D007888 6.3e-57 225.3 286 50.0
RcHm_v2.0_Chr5g0006301 Rosa chinensis HOM05D006486 ORTHO05D007888 1.0e-54 218.0 285 47.4
MD10G1303500 Malus domestica HOM05D006486 ORTHO05D007888 7.5e-50 201.8 292 46.9
FAN16G2112 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.8e-48 197.2 289 46.0
Cfa000350 Carpinus fangiana HOM05D006486 ORTHO05D007888 2.4e-48 196.8 305 44.3
MD05G1325600 Malus domestica HOM05D006486 ORTHO05D007888 1.2e-47 194.5 280 46.8
FAN21G2539 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.3e-46 191.0 299 46.2
FvH4_3g03970 Fragaria vesca HOM05D006486 ORTHO05D007888 8.6e-46 188.3 290 50.7
FAN11G1020 Fragaria x ananassa HOM05D006486 ORTHO05D007888 8.6e-46 188.3 290 50.7
CiPaw.09G157800 Carya illinoinensis HOM05D006486 ORTHO05D007888 3.6e-44 183.0 307 43.3
FAN25G3184 Fragaria x ananassa HOM05D006486 ORTHO05D007888 3.6e-44 183.0 289 44.6
Haze_06576 Corylus avellana HOM05D006486 ORTHO05D007888 1.8e-43 180.6 304 41.4
Haze_06575 Corylus avellana HOM05D006486 ORTHO05D007888 2.3e-43 180.3 304 41.4
QL04p018235 Quercus lobata HOM05D006486 ORTHO05D007888 9.8e-42 174.9 279 45.9
arahy.Tifrunner.gnm1.ann1.4FF3SU Arachis hypogaea HOM05D006486 ORTHO05D007888 3.7e-41 172.9 284 43.7
arahy.Tifrunner.gnm1.ann1.3M60GY Arachis hypogaea HOM05D006486 ORTHO05D007888 8.3e-41 171.8 284 39.8
TAR624G1400 Trochodendron aralioides HOM05D006486 ORTHO05D007888 7.0e-40 168.7 267 42.3
Cpa.g.sc27.128 Carica papaya HOM05D006486 ORTHO05D007888 9.2e-40 168.3 271 42.4
Glyma.13G246500 Glycine max HOM05D006486 ORTHO05D007888 2.0e-39 167.2 282 41.1
Glyma.15G067400 Glycine max HOM05D006486 ORTHO05D007888 3.5e-39 166.4 282 41.1
Nn1g06762 Nelumbo nucifera HOM05D006486 ORTHO05D007888 5.9e-39 165.6 267 42.3
TWI63G1620 Tripterygium wilfordii HOM05D006486 ORTHO05D007888 7.8e-39 165.2 276 42.0
TPR.G36802 Trifolium pratense HOM05D006486 ORTHO05D007888 6.6e-38 162.2 276 41.3
GSVIVG01003184001 Vitis vinifera HOM05D006486 ORTHO05D007888 6.6e-38 162.2 284 43.0
Medtr2g011760 Medicago truncatula HOM05D006486 ORTHO05D007888 4.3e-37 159.5 275 39.6
TAR629G2100 Trochodendron aralioides HOM05D006486 ORTHO05D007888 2.8e-36 156.8 276 40.6
Lj4g0025313 Lotus japonicus HOM05D006486 ORTHO05D007888 4.0e-35 152.9 282 39.0
Manes.17G039100 Manihot esculenta HOM05D006486 ORTHO05D007888 1.2e-34 151.4 280 41.1
Nn1g03891 Nelumbo nucifera HOM05D006486 ORTHO05D007888 1.2e-34 151.4 283 37.8
Ca_00252_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 3.4e-34 149.8 275 40.4
TPR.G25690 Trifolium pratense HOM05D006486 ORTHO05D007888 3.4e-34 149.8 271 41.0
Lalb_Chr20g0122301 Lupinus albus HOM05D006486 ORTHO05D007888 4.4e-34 149.4 279 38.7
Ciclev10016271m.g Citrus clementina HOM05D006486 ORTHO05D007888 5.8e-34 149.1 284 42.3
Lj6g0020154 Lotus japonicus HOM05D006486 ORTHO05D007888 7.5e-34 148.7 278 39.6
CSS0009661 Camellia sinensis var. sinensis HOM05D006486 ORTHO05D007888 3.7e-33 146.4 280 40.4
Medtr4g091220 Medicago truncatula HOM05D006486 ORTHO05D007888 4.1e-32 142.9 273 40.7
Cc02_g12410 Coffea canephora HOM05D006486 ORTHO05D007888 5.4e-32 142.5 282 38.3
Manes.16G020500 Manihot esculenta HOM05D006486 ORTHO05D007888 5.4e-32 142.5 286 39.2
Actinidia24058 Actinidia chinensis HOM05D006486 ORTHO05D007888 7.8e-31 138.7 246 41.1
Atru.chr10.2014 Acer truncatum HOM05D006486 ORTHO05D007888 1.3e-30 137.9 291 37.5
Glyma.08G059200 Glycine max HOM05D006486 ORTHO05D007888 8.6e-30 135.2 286 37.8
Rhsim02G0119500 Rhododendron simsii HOM05D006486 ORTHO05D007888 4.3e-29 132.9 291 35.4
Sabra11G0029300 Salix brachista HOM05D006486 ORTHO05D007888 1.2e-28 131.3 275 39.3
Lj1P1213T18 Lonicera japonica HOM05D006486 ORTHO05D007888 2.1e-28 130.6 153 47.7
COL.COLO4_31586 Corchorus olitorius HOM05D006486 ORTHO05D007888 2.8e-28 130.2 274 40.1
Phvul.006G192300 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 3.6e-28 129.8 282 35.8
Psat1g208760 Pisum sativum HOM05D006486 ORTHO05D007888 4.7e-28 129.4 259 39.0
MSTRG.7289 Avicennia marina HOM05D006486 ORTHO05D007888 1.1e-27 128.3 282 36.9
Potri.011G042600 Populus trichocarpa HOM05D006486 ORTHO05D007888 1.4e-27 127.9 279 39.4
VMungo0540G0810 Vigna mungo HOM05D006486 ORTHO05D007888 1.4e-27 127.9 282 36.5
Solyc02g079160.2 Solanum lycopersicum HOM05D006486 ORTHO05D007888 2.3e-27 127.1 269 38.7
Aqoxy1G03879 Aquilegia oxysepala HOM05D006486 ORTHO05D007888 4.0e-27 126.3 278 36.3
Thecc.06G199700 Theobroma cacao HOM05D006486 ORTHO05D007888 4.0e-27 126.3 281 39.9
Psat7g109320 Pisum sativum HOM05D006486 ORTHO05D007888 4.4e-26 122.9 267 36.3
Ca_18481_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 5.8e-26 122.5 143 50.3
Nitab4.5_0002222g0020 Nicotiana tabacum HOM05D006486 ORTHO05D007888 9.8e-26 121.7 313 34.2
Duzib235G1194 Durio zibethinus HOM05D006486 ORTHO05D007888 1.3e-25 121.3 275 38.5
Oeu014709.1 Olea europaea HOM05D006486 ORTHO05D007888 1.7e-25 120.9 267 34.5
THA.LOC104812719 Tarenaya hassleriana HOM05D006486 ORTHO05D007888 2.2e-25 120.6 265 34.3
Sopen02g023960 Solanum pennellii HOM05D006486 ORTHO05D007888 6.4e-25 119.0 265 38.1
HanXRQChr16g0517421 Helianthus annuus HOM05D006486 ORTHO05D007888 2.4e-24 117.1 300 33.7
PGSC0003DMG400022406 Solanum tuberosum HOM05D006486 ORTHO05D007888 2.4e-24 117.1 275 36.4
VMungo0251G3177 Vigna mungo HOM05D006486 ORTHO05D007888 2.4e-24 117.1 151 46.4
Potri.004G034200 Populus trichocarpa HOM05D006486 ORTHO05D007888 9.2e-24 115.2 278 37.1
Nitab4.5_0000190g0060 Nicotiana tabacum HOM05D006486 ORTHO05D007888 2.1e-23 114.0 272 37.1
SGA_v2.0_scaffold7G03946 Striga asiatica HOM05D006486 ORTHO05D007888 4.6e-23 112.8 296 34.5
CDE05G2620 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 1.0e-22 111.7 295 33.6
Nitab4.5_0006573g0010 Nicotiana tabacum HOM05D006486 ORTHO05D007888 3.0e-22 110.2 280 36.4
Sed0019218 Sechium edule HOM05D006486 ORTHO05D007888 1.1e-21 108.2 270 36.3
Gohir.A10G021000 Gossypium hirsutum HOM05D006486 ORTHO05D007888 3.3e-21 106.7 284 36.3
Gohir.D10G021800 Gossypium hirsutum HOM05D006486 ORTHO05D007888 4.3e-21 106.3 281 35.9
Gorai.011G022900 Gossypium raimondii HOM05D006486 ORTHO05D007888 4.3e-21 106.3 281 35.9
Peaxi162Scf00083g00023 Petunia axillaris HOM05D006486 ORTHO05D007888 4.3e-21 106.3 266 36.8
HanXRQChr08g0224091 Helianthus annuus HOM05D006486 ORTHO05D007888 9.5e-21 105.1 323 31.3
MSTRG.15936 Avicennia marina HOM05D006486 ORTHO05D007888 1.6e-20 104.4 279 32.3
Carub.0007s1992 Capsella rubella HOM05D006486 ORTHO05D007888 8.1e-20 102.1 287 30.7
SalBow8G4438 Salvia bowleyana HOM05D006486 ORTHO05D007888 1.8e-19 100.9 132 49.2
Actinidia11810 Actinidia chinensis HOM05D006486 ORTHO05D007888 2.3e-19 100.5 163 40.5
PSO210G7027 Papaver somniferum HOM05D006486 ORTHO05D007888 4.0e-19 99.8 278 31.7
Sabra04G0019900 Salix brachista HOM05D006486 ORTHO05D007888 4.0e-19 99.8 280 35.4
Lsat_1_v5_gn_4_56921 Lactuca sativa HOM05D006486 ORTHO05D007888 5.2e-19 99.4 132 43.9
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 8.9e-19 98.6 152 42.1
PSO832G0007 Papaver somniferum HOM05D006486 ORTHO05D007888 1.2e-18 98.2 280 31.1
Aa31LG6G3500 Aethionema arabicum HOM05D006486 ORTHO05D007888 2.6e-18 97.1 282 34.4
Migut.M01215 Erythranthe guttata HOM05D006486 ORTHO05D007888 4.4e-18 96.3 275 32.0
Oeu043421.1 Olea europaea HOM05D006486 ORTHO05D007888 7.6e-18 95.5 151 40.4
Oeu059548.1 Olea europaea HOM05D006486 ORTHO05D007888 2.2e-17 94.0 246 33.3
PGR004G0715 Punica granatum HOM05D006486 ORTHO05D007888 2.2e-17 94.0 278 34.5
ClCG01G022550 Citrullus lanatus HOM05D006486 ORTHO05D007888 1.4e-16 91.3 279 33.7
Phvul.002G221700 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 3.2e-16 90.1 284 31.0
AL7G32570 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 4.1e-16 89.7 279 32.3
ECA234G0536 Erigeron canadensis HOM05D006486 ORTHO05D007888 4.1e-16 89.7 165 35.8
CsaV3_6G049740 Cucumis sativus L. HOM05D006486 ORTHO05D007888 5.4e-16 89.4 288 30.6
AT4G21500 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 7.1e-16 89.0 275 31.3
BcaNung02794 Brassica carinata HOM05D006486 ORTHO05D007888 1.5e-13 81.3 282 29.4
EL10Ac8g20532 Beta vulgaris HOM05D006486 ORTHO05D007888 9.6e-13 78.6 320 29.7
CARHR228160 Cardamine hirsuta HOM05D006486 ORTHO05D007888 1.2e-12 78.2 279 29.4
A01p12810 Brassica napus HOM05D006486 ORTHO05D007888 3.6e-12 76.6 273 29.7
BolC1t01497H Brassica oleracea HOM05D006486 ORTHO05D007888 4.7e-12 76.3 270 30.0
Thhalv10026096m.g Eutrema salsugineum HOM05D006486 ORTHO05D007888 8.1e-12 75.5 285 30.9
C01p15430 Brassica napus HOM05D006486 ORTHO05D007888 1.1e-11 75.1 270 30.4
Sp7g19620 Schrenkiella parvula HOM05D006486 ORTHO05D007888 1.8e-11 74.3 283 32.2
Oeu030052.1 Olea europaea HOM05D006486 ORTHO05D007888 2.4e-11 73.9 232 29.7
Sed0006081 Sechium edule HOM05D006486 ORTHO05D007888 2.4e-11 73.9 351 27.9
ATR0693G170 Amborella trichopoda HOM05D006486 ORTHO05D007888 1.2e-10 71.6 135 39.3
MELO3C007322.2 Cucumis melo HOM05D006486 ORTHO05D007888 1.2e-10 71.6 281 29.2
CDE05G2026 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 7.6e-10 68.9 243 26.7
BraA01t01225Z Brassica rapa HOM05D006486 ORTHO05D007888 1.3e-09 68.2 275 27.6
Gohir.D06G211933 Gossypium hirsutum HOM05D006486 ORTHO05D007888 4.9e-09 66.2 271 31.7
Gorai.010G254200 Gossypium raimondii HOM05D006486 ORTHO05D007888 3.2e-08 63.5 269 32.0
Oeu051330.1 Olea europaea HOM05D006486 ORTHO05D007888 3.2e-08 63.5 83 41.0
Gohir.D09G070600 Gossypium hirsutum HOM05D006486 ORTHO05D007888 4.2e-08 63.2 267 31.1
Gorai.006G085300 Gossypium raimondii HOM05D006486 ORTHO05D007888 4.2e-08 63.2 267 31.1
Sc24g0000710 Simmondsia chinensis HOM05D006486 ORTHO05D007888 1.2e-07 61.6 121 36.4
Nitab4.5_0001007g0050 Nicotiana tabacum HOM05D006486 ORTHO05D007888 2.1e-07 60.8 231 28.6
DCAR_004139 Daucus carota HOM05D006486 ORTHO05D007888 7.8e-07 58.9 234 29.5


User provided reference genes

Program Settings