Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 2034.2 1062 100.0
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1681.0 1038 85.3
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1643.6 1071 80.9
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1628.6 1058 79.2
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1624.8 1057 81.4
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1624.8 1034 82.3
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1623.6 1046 81.8
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1617.4 1059 79.9
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1613.6 1058 81.8
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1610.5 1058 80.7
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1610.1 1034 81.5
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1604.7 1086 78.8
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1604.0 1057 80.7
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1600.9 1057 80.4
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1600.5 1035 81.3
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1597.0 1059 80.1
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1596.3 1058 79.7
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1595.1 1062 80.1
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1591.2 1058 80.4
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1588.9 1058 80.7
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1588.2 1057 80.6
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1583.9 1074 80.2
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1582.8 1058 81.0
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1582.4 1060 79.4
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1582.4 1060 79.4
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1577.0 1048 79.8
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1574.7 1057 79.9
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1568.9 1057 79.8
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1568.5 1058 78.5
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1566.2 1060 78.0
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1564.3 1060 79.2
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1560.8 1055 79.4
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1559.3 1031 78.5
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1552.7 1058 75.1
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1551.2 1061 78.1
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1548.5 1054 78.4
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1547.3 1087 76.3
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1545.8 1078 73.9
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1542.7 1059 77.9
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1542.3 1063 78.0
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1537.7 1056 75.9
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1531.2 1014 80.1
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1530.8 1088 75.2
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1527.3 990 81.4
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1526.9 1058 76.9
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1525.0 1064 76.5
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1511.1 1059 74.7
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1510.4 1054 76.5
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1506.9 1163 70.9
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1504.2 1087 74.8
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1495.7 1061 74.8
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1490.7 869 85.2
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1483.4 871 84.0
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1482.2 871 84.0
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1481.5 1058 72.7
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1480.7 871 83.9
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1480.7 1070 73.5
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1480.3 978 77.1
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1472.2 936 79.5
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1462.2 947 77.3
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1455.7 1060 72.9
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1454.9 1076 72.6
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1449.5 1073 72.5
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1447.6 947 76.9
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1444.5 947 76.9
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1442.6 1059 71.6
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1442.2 976 75.0
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1435.2 1047 72.8
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1431.0 1049 73.6
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1431.0 1030 73.3
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1425.6 947 76.2
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1425.6 947 76.2
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1424.5 947 76.1
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1424.5 947 76.1
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1421.8 1045 73.5
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1420.6 1066 70.5
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1416.0 978 74.1
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1408.7 1054 72.4
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1405.2 871 80.8
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1397.5 1060 69.9
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1394.0 1012 71.3
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1386.7 1075 70.0
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1379.0 1098 67.7
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1377.8 1131 67.6
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1375.9 1112 68.3
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1364.7 1066 69.1
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1364.4 1041 71.2
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1359.0 1058 68.8
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1353.6 1060 67.3
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1343.6 1059 67.8
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1337.8 1173 62.8
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1330.1 1059 69.9
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1317.8 899 74.1
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1314.3 1045 66.4
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1296.6 1232 59.7
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1290.8 1099 65.7
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1267.7 1086 62.9
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1265.8 927 69.9
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1186.4 886 66.0
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1186.0 940 63.4
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1117.1 940 60.5
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1115.1 692 79.3
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1114.8 690 79.4
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 2.5e-310 1068.9 1053 59.0
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 1.1e-278 963.8 690 71.4
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 4.1e-276 955.3 635 76.7
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.7e-274 949.9 744 62.6
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.6e-272 943.3 545 85.0
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 3.0e-255 885.9 629 71.4
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-191 674.9 570 61.2
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.3e-178 631.3 507 73.2
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 1.6e-163 581.3 460 64.6
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 4.6e-155 553.1 318 86.2
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.2e-125 454.5 450 56.7
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 5.0e-125 453.4 368 60.1
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 5.5e-124 449.9 397 69.3
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 4.0e-114 417.2 400 64.8
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 9.5e-100 369.4 233 77.3
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 9.8e-97 359.4 276 65.9
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 9.8e-97 359.4 230 76.1
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 4.7e-91 340.5 322 59.0
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 6.8e-90 336.7 1089 27.6
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 4.9e-88 330.5 252 70.6
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 2.7e-78 298.1 1078 26.1
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 5.3e-66 257.3 134 89.6
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 2.2e-64 251.9 190 66.8
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.4e-55 222.6 390 38.2
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.3e-55 219.9 145 72.4
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 5.1e-45 187.6 99 86.9
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 6.7e-45 187.2 245 50.2
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.4e-42 179.5 107 84.1
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 9.0e-42 176.8 219 48.9
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 9.0e-42 176.8 103 78.6
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 4.5e-41 174.5 236 41.1
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.7e-40 172.6 108 75.9
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 6.1e-38 164.1 89 87.6
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 6.1e-38 164.1 149 57.7
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 2.3e-37 162.2 121 66.9
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 2.0e-36 159.1 237 43.0
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.3e-36 157.9 484 28.7
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.8e-35 154.5 119 63.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 3.4e-33 148.3 150 57.3
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 2.2e-32 145.6 150 56.7
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.0e-29 135.2 93 75.3
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.3e-27 129.8 86 79.1
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 6.3e-27 127.5 276 40.2
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.9e-24 118.6 108 61.1
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.9e-24 118.6 108 61.1
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.9e-24 118.6 108 61.1
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 5.2e-21 107.8 97 67.0
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 6.7e-21 107.5 91 67.0
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 8.8e-21 107.1 79 67.1
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.8e-19 102.1 62 80.6
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.3e-18 97.8 67 70.1
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-17 96.7 147 42.9
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.5e-17 95.1 59 76.3
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.5e-17 94.7 79 58.2
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.9e-16 92.0 61 68.9
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 1.1e-15 90.1 47 97.9
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 3.2e-15 88.6 51 80.4
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.6e-14 86.3 228 35.5
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.7e-12 77.8 106 47.2
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.7e-11 76.3 82 52.4
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 6.3e-11 74.3 82 61.0
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 8.3e-11 73.9 63 55.6
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.3e-11 73.9 188 35.6
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 2.4e-10 72.4 77 51.9
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 5.9e-09 67.8 77 49.4
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 5.0e-08 64.7 156 28.2
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 7.2e-07 60.8 226 22.6
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 9.4e-07 60.5 68 48.5
BcaNung03874 Brassica carinata HOM05D001509 ORTHO05D001361 3.6e-06 58.5 163 27.0
SEGI_25041 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.1e-06 57.8 73 42.5
MCO11G359 Micromonas commoda HOM05D026299 ORTHO05D028720 8.0e-06 57.4 227 21.1


User provided reference genes

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