Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 2.8e-202 708.4 351 100.0
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 2.8e-109 399.4 352 59.7
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 4.4e-107 392.1 321 62.0
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 1.4e-105 387.1 358 56.1
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 3.2e-105 386.0 356 58.4
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 3.5e-104 382.5 357 56.3
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 7.8e-104 381.3 355 56.9
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 7.8e-104 381.3 307 63.2
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 3.9e-103 379.0 349 58.2
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 1.5e-102 377.1 322 58.7
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 4.3e-102 375.6 328 58.2
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 9.6e-102 374.4 319 58.0
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.8e-101 372.9 349 56.2
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 2.4e-100 369.8 328 58.2
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 1.5e-99 367.1 348 54.9
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 1.5e-99 367.1 344 54.7
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 1.3e-98 364.0 325 58.2
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.7e-98 363.6 344 54.4
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 2.2e-98 363.2 330 55.5
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 2.2e-98 363.2 344 54.4
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 4.9e-98 362.1 350 56.6
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 1.4e-97 360.5 321 58.9
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 2.4e-97 359.8 322 57.1
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 5.4e-97 358.6 322 59.3
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 9.3e-97 357.8 359 53.8
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 1.2e-96 357.5 321 58.3
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.6e-96 357.1 321 58.3
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 2.1e-96 356.7 318 56.9
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 3.5e-96 355.9 318 57.5
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 4.6e-96 355.5 343 58.0
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 4.6e-96 355.5 318 56.6
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 6.0e-96 355.1 329 57.8
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 1.0e-95 354.4 344 55.8
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.7e-95 353.6 317 56.5
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 3.0e-95 352.8 364 51.1
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 3.9e-95 352.4 329 56.2
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 5.1e-95 352.1 332 56.6
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 8.7e-95 351.3 354 53.7
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 8.7e-95 351.3 331 55.9
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 1.5e-94 350.5 334 56.3
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 2.5e-94 349.7 331 57.7
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 2.5e-94 349.7 336 58.9
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 9.6e-94 347.8 356 52.8
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 9.6e-94 347.8 316 55.7
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 3.6e-93 345.9 329 54.7
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 4.8e-93 345.5 334 55.4
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 4.8e-93 345.5 359 52.6
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 6.2e-93 345.1 361 51.0
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 2.4e-92 343.2 361 52.9
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 4.0e-92 342.4 355 54.1
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 4.0e-92 342.4 323 54.2
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 5.3e-92 342.0 361 50.4
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 5.3e-92 342.0 328 55.5
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 6.9e-92 341.7 358 52.0
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 9.0e-92 341.3 325 55.4
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 4.5e-91 339.0 347 52.7
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 5.8e-91 338.6 360 52.2
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 1.3e-90 337.4 325 54.5
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 1.3e-90 337.4 356 52.5
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 2.2e-90 336.7 323 54.5
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 8.4e-90 334.7 308 54.2
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 1.4e-89 334.0 348 54.6
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.4e-89 334.0 268 61.6
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 5.4e-89 332.0 323 52.3
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 5.4e-89 332.0 327 52.6
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 2.1e-88 330.1 308 53.9
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 2.7e-88 329.7 308 53.9
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 4.6e-88 328.9 340 51.5
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 1.3e-87 327.4 364 48.4
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 3.9e-87 325.9 354 52.8
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 3.9e-87 325.9 336 52.7
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 5.1e-87 325.5 367 48.0
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 6.7e-87 325.1 367 47.4
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 1.5e-86 323.9 324 52.5
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 2.5e-86 323.2 344 50.9
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 3.3e-86 322.8 365 47.7
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 4.3e-86 322.4 316 53.5
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 7.4e-86 321.6 344 50.3
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 7.4e-86 321.6 346 52.3
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 9.6e-86 321.2 344 52.0
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.3e-85 320.9 368 48.6
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 2.1e-85 320.1 352 48.9
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 8.1e-85 318.2 308 51.3
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 8.1e-85 318.2 362 48.1
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 1.4e-84 317.4 318 52.5
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.8e-84 317.0 303 51.5
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 2.4e-84 316.6 402 45.3
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 5.8e-83 312.0 352 48.0
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 2.9e-82 309.7 347 50.1
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 4.9e-82 308.9 360 47.2
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 1.1e-81 307.8 358 46.6
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.1e-80 303.5 359 47.4
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 2.1e-80 303.5 317 51.7
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 2.1e-80 303.5 319 49.5
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 2.7e-80 303.1 336 48.8
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 1.2e-75 287.7 307 53.4
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 1.5e-75 287.3 246 59.8
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 3.4e-75 286.2 329 48.3
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 6.9e-68 261.9 342 46.5
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 7.9e-64 248.4 284 48.2
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 1.0e-63 248.1 245 51.4
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 1.4e-55 221.1 176 61.9
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 3.9e-55 219.5 207 53.1
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 8.8e-55 218.4 336 40.8
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 1.8e-52 210.7 336 40.2
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 4.2e-49 199.5 387 36.2
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 1.2e-48 198.0 382 35.6
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 4.5e-43 179.5 248 38.7
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 3.7e-37 159.8 208 45.2
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.4e-36 157.9 222 40.5
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.4e-36 157.1 217 41.0
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 5.4e-36 156.0 280 33.2
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.6e-35 154.5 226 39.4
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 2.0e-35 154.1 227 37.4
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.0e-34 149.4 253 34.4
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.5e-33 147.9 240 37.5
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.2e-33 146.7 244 35.7
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 3.6e-32 143.3 222 37.8
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.0e-31 141.7 209 38.3
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 8.3e-29 132.1 120 55.0
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 8.3e-29 132.1 345 29.6
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 5.6e-25 119.4 117 53.0
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 4.4e-22 109.8 163 35.6
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.6e-19 101.3 84 59.5
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 1.6e-19 101.3 129 45.0
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 1.6e-08 64.7 84 46.4
CDE04G2496 Ceratophyllum demersum HOM05D000548 ORTHO05D001552 4.0e-07 60.1 127 32.3
CAN.G1425.22 Capsicum annuum HOM05D000548 ORTHO05D001552 8.9e-07 58.9 123 31.7
SGA_v2.0_scaffold38G14966 Striga asiatica HOM05D000548 ORTHO05D001552 4.4e-06 56.6 128 32.0
Peaxi162Scf00683g00026 Petunia axillaris HOM05D000548 ORTHO05D001552 5.8e-06 56.2 116 31.0
Nitab4.5_0002906g0130 Nicotiana tabacum HOM05D000548 ORTHO05D001552 7.5e-06 55.8 152 30.3
Solyc03g119300.4 Solanum lycopersicum HOM05D000548 ORTHO05D001552 7.5e-06 55.8 116 31.9


User provided reference genes

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