Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0949 Cannabis sativa HOM05D001384 ORTHO05D001215 1.2e-25 119.4 75 100.0
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 2.2e-11 72.0 64 65.6
QL04p058637 Quercus lobata HOM05D001384 ORTHO05D001215 1.1e-10 69.7 55 83.6
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 1.4e-10 69.3 62 64.5
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 1.8e-10 68.9 63 65.1
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 2.4e-10 68.6 72 61.1
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 3.1e-10 68.2 63 65.1
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 4.1e-10 67.8 78 56.4
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 5.3e-10 67.4 72 62.5
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 5.3e-10 67.4 62 61.3
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 7.0e-10 67.0 60 65.0
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 7.0e-10 67.0 60 65.0
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 7.0e-10 67.0 72 61.1
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 9.1e-10 66.6 60 75.0
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.2e-09 66.2 60 63.3
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.2e-09 66.2 60 63.3
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 1.2e-09 66.2 60 63.3
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 1.2e-09 66.2 72 59.7
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 1.6e-09 65.9 63 60.3
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 1.6e-09 65.9 60 63.3
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 1.6e-09 65.9 60 63.3
Ciclev10023364m.g Citrus clementina HOM05D001384 ORTHO05D001215 1.6e-09 65.9 68 64.7
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.6e-09 65.9 63 58.7
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.6e-09 65.9 63 61.9
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.6e-09 65.9 63 61.9
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.6e-09 65.9 63 61.9
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 2.0e-09 65.5 63 63.5
QL04p059433 Quercus lobata HOM05D001384 ORTHO05D001215 2.0e-09 65.5 72 70.8
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 2.0e-09 65.5 72 55.6
PGSC0003DMG400000207 Solanum tuberosum HOM05D001384 ORTHO05D001215 2.0e-09 65.5 64 57.8
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 2.7e-09 65.1 69 60.9
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 2.7e-09 65.1 63 61.9
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 2.7e-09 65.1 48 70.8
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 2.7e-09 65.1 63 58.7
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 2.7e-09 65.1 65 58.5
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 3.5e-09 64.7 64 59.4
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.5e-09 64.7 63 60.3
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 3.5e-09 64.7 66 69.7
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 4.5e-09 64.3 69 56.5
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 4.5e-09 64.3 63 58.7
Prupe.2G183500 Prunus persica HOM05D001384 ORTHO05D001215 4.5e-09 64.3 35 91.4
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 4.5e-09 64.3 65 58.5
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 5.9e-09 63.9 72 58.3
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 5.9e-09 63.9 63 57.1
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 5.9e-09 63.9 63 58.7
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 5.9e-09 63.9 63 58.7
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 7.7e-09 63.5 62 64.5
CAN.G986.43 Capsicum annuum HOM05D001384 ORTHO05D001215 7.7e-09 63.5 60 61.7
Dinv32554 Davidia involucrata HOM05D001384 ORTHO05D001215 7.7e-09 63.5 68 67.6
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 7.7e-09 63.5 63 71.4
MD01G1076000 Malus domestica HOM05D001384 ORTHO05D001215 7.7e-09 63.5 35 88.6
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 7.7e-09 63.5 67 58.2
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.0e-08 63.2 64 62.5
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 1.0e-08 63.2 64 68.8
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.0e-08 63.2 63 58.7
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.0e-08 63.2 63 58.7
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.0e-08 63.2 63 58.7
BcaC02g12816 Brassica carinata HOM05D001384 ORTHO05D001215 1.3e-08 62.8 64 57.8
A05p01460 Brassica napus HOM05D001384 ORTHO05D001215 1.3e-08 62.8 64 57.8
C04p01650 Brassica napus HOM05D001384 ORTHO05D001215 1.3e-08 62.8 64 57.8
BolC4t21817H Brassica oleracea HOM05D001384 ORTHO05D001215 1.3e-08 62.8 64 57.8
BraA05t19143Z Brassica rapa HOM05D001384 ORTHO05D001215 1.3e-08 62.8 64 57.8
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 1.3e-08 62.8 67 53.7
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 1.3e-08 62.8 59 59.3
MD07G1144900 Malus domestica HOM05D001384 ORTHO05D001215 1.3e-08 62.8 34 91.2
Mapoly0024s0017 Marchantia polymorpha HOM05D001384 ORTHO05D001215 1.3e-08 62.8 73 64.4
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 1.7e-08 62.4 59 61.0
Gohir.A07G139600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.7e-08 62.4 72 54.2
Gohir.D07G144700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.7e-08 62.4 72 54.2
Gorai.001G156700 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.7e-08 62.4 72 54.2
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 1.7e-08 62.4 65 56.9
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.7e-08 62.4 67 65.7
Zm00001eb359480 Zea mays HOM05D001384 ORTHO05D001215 1.7e-08 62.4 34 88.2
CsaV3_3G008420 Cucumis sativus L. HOM05D001384 ORTHO05D001215 2.9e-08 61.6 36 88.9
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 2.9e-08 61.6 64 51.6
FAN03G0436 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.9e-08 61.6 35 88.6
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 3.8e-08 61.2 62 59.7
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 3.8e-08 61.2 73 53.4
Manes.01G249100 Manihot esculenta HOM05D001384 ORTHO05D001215 3.8e-08 61.2 53 69.8
TWI59G0487 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 3.8e-08 61.2 65 66.2
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 3.8e-08 61.2 65 58.5
Aqoxy5G04117 Aquilegia oxysepala HOM05D001384 ORTHO05D001215 5.0e-08 60.8 38 89.5
ClCG05G001090 Citrullus lanatus HOM05D001384 ORTHO05D001215 5.0e-08 60.8 77 62.3
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 5.0e-08 60.8 64 57.8
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 5.0e-08 60.8 64 57.8
Thecc.03G292300 Theobroma cacao HOM05D001384 ORTHO05D001215 5.0e-08 60.8 66 56.1
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 6.5e-08 60.5 62 58.1
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 6.5e-08 60.5 64 56.2
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 6.5e-08 60.5 64 56.2
MELO3C006062.2 Cucumis melo HOM05D001384 ORTHO05D001215 6.5e-08 60.5 54 79.6
Os05g0217000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 6.5e-08 60.5 34 82.4
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 8.5e-08 60.1 59 57.6
COL.COLO4_21727 Corchorus olitorius HOM05D001384 ORTHO05D001215 8.5e-08 60.1 62 71.0
FAN06G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.5e-08 60.1 35 88.6
FAN06G3780 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.5e-08 60.1 35 88.6
FAN10G1694 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.5e-08 60.1 35 88.6
FAN10G3769 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.5e-08 60.1 35 88.6
Rhsim07G0006800 Rhododendron simsii HOM05D001384 ORTHO05D001215 8.5e-08 60.1 70 54.3
Actinidia02805 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.1e-07 59.7 35 85.7
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.1e-07 59.7 60 56.7
Os06g0505700 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.1e-07 59.7 34 85.3
Rhsim01G0169300 Rhododendron simsii HOM05D001384 ORTHO05D001215 1.1e-07 59.7 35 85.7
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 1.1e-07 59.7 60 60.0
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 1.5e-07 59.3 61 60.7
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 1.5e-07 59.3 61 60.7
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 1.5e-07 59.3 69 58.0
Glyma.03G255700 Glycine max HOM05D001384 ORTHO05D001215 1.5e-07 59.3 67 55.2
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 1.5e-07 59.3 69 53.6
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.5e-07 59.3 59 61.0
Zm00001eb350580 Zea mays HOM05D001384 ORTHO05D001215 1.5e-07 59.3 34 82.4
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 1.9e-07 58.9 62 58.1
Oeu030571.1 Olea europaea HOM05D001384 ORTHO05D001215 1.9e-07 58.9 61 59.0
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 1.9e-07 58.9 74 60.8
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 1.9e-07 58.9 73 54.8
GSVIVG01027049001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.9e-07 58.9 35 85.7
Zm00001eb237880 Zea mays HOM05D001384 ORTHO05D001215 1.9e-07 58.9 34 85.3
Duzib084G1120 Durio zibethinus HOM05D001384 ORTHO05D001215 2.5e-07 58.5 74 55.4
Lalb_Chr04g0261751 Lupinus albus HOM05D001384 ORTHO05D001215 2.5e-07 58.5 37 83.8
RcHm_v2.0_Chr1g0358781 Rosa chinensis HOM05D001384 ORTHO05D001215 2.5e-07 58.5 34 88.2
Mapoly0079s0002 Marchantia polymorpha HOM05D001384 ORTHO05D001215 3.2e-07 58.2 73 43.8
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 3.2e-07 58.2 70 50.0
Sp5g01770 Schrenkiella parvula HOM05D001384 ORTHO05D001215 3.2e-07 58.2 57 64.9
Duzib068G0580 Durio zibethinus HOM05D001384 ORTHO05D001215 4.2e-07 57.8 73 52.1
FAN01G1051 Fragaria x ananassa HOM05D001384 ORTHO05D001215 4.2e-07 57.8 68 69.1
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 4.2e-07 57.8 66 56.1
Os02g0264800 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 4.2e-07 57.8 68 60.3
THA.LOC104817336 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 4.2e-07 57.8 62 56.5
unitig_736.g22817 Utricularia gibba HOM05D001384 ORTHO05D001215 4.2e-07 57.8 61 67.2
Actinidia20196 Actinidia chinensis HOM05D001384 ORTHO05D001215 5.5e-07 57.4 35 82.9
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 5.5e-07 57.4 62 58.1
EL10Ac3g05350 Beta vulgaris HOM05D001384 ORTHO05D001215 7.2e-07 57.0 52 63.5
Dinv37556 Davidia involucrata HOM05D001384 ORTHO05D001215 7.2e-07 57.0 56 62.5
Gorai.008G252400 Gossypium raimondii HOM05D001384 ORTHO05D001215 7.2e-07 57.0 53 60.4
HanXRQChr04g0121001 Helianthus annuus HOM05D001384 ORTHO05D001215 7.2e-07 57.0 59 50.8
Manes.05G026100 Manihot esculenta HOM05D001384 ORTHO05D001215 9.4e-07 56.6 71 64.8
CSS0021424 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 1.2e-06 56.2 74 56.8
CDE02G4026 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.2e-06 56.2 60 53.3
CDE09G1367 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.2e-06 56.2 30 90.0
Gohir.A12G234600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-06 56.2 61 55.7
Lsat_1_v5_gn_6_11901 Lactuca sativa HOM05D001384 ORTHO05D001215 1.2e-06 56.2 72 52.8
Medtr8g099245 Medicago truncatula HOM05D001384 ORTHO05D001215 1.2e-06 56.2 60 46.7
Sabra02G0144100 Salix brachista HOM05D001384 ORTHO05D001215 1.2e-06 56.2 35 80.0
SMO143G0078 Selaginella moellendorffii HOM05D001384 ORTHO05D001215 1.2e-06 56.2 50 78.0
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 1.6e-06 55.8 68 55.9
arahy.Tifrunner.gnm1.ann1.246EX0 Arachis hypogaea HOM05D001384 ORTHO05D001215 1.6e-06 55.8 59 67.8
Zm00001eb203920 Zea mays HOM05D001384 ORTHO05D001215 1.6e-06 55.8 33 81.8
arahy.Tifrunner.gnm1.ann1.T3QZI5 Arachis hypogaea HOM05D001384 ORTHO05D001215 2.1e-06 55.5 50 68.0
arahy.Tifrunner.gnm1.ann1.Y9NP63 Arachis hypogaea HOM05D001384 ORTHO05D001215 2.1e-06 55.5 50 68.0
Duzib205G1079 Durio zibethinus HOM05D001384 ORTHO05D001215 2.1e-06 55.5 67 53.7
Lj4g0006841 Lotus japonicus HOM05D001384 ORTHO05D001215 2.1e-06 55.5 60 58.3
Os01g0657000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 2.1e-06 55.5 68 55.9
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 2.7e-06 55.1 56 58.9
Ca_17497_v3 Cicer arietinum L. HOM05D001384 ORTHO05D001215 2.7e-06 55.1 55 50.9
AagrBONN_evm.TU.Sc2ySwM_117.409 Anthoceros agrestis HOM05D001384 ORTHO05D001215 3.6e-06 54.7 61 57.4
MELO3C034006.2 Cucumis melo HOM05D001384 ORTHO05D001215 3.6e-06 54.7 33 81.8
Gohir.D12G235700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.6e-06 54.7 61 54.1
Sc13g0009580 Simmondsia chinensis HOM05D001384 ORTHO05D001215 4.7e-06 54.3 52 76.9
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 6.1e-06 53.9 68 51.5
Gohir.D11G023500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.1e-06 53.9 73 49.3
Lsat_1_v5_gn_7_1901 Lactuca sativa HOM05D001384 ORTHO05D001215 6.1e-06 53.9 70 45.7
Lj1g0002747 Lotus japonicus HOM05D001384 ORTHO05D001215 6.1e-06 53.9 63 54.0
Phvul.006G110400 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 6.1e-06 53.9 59 57.6
Psat7g027760 Pisum sativum HOM05D001384 ORTHO05D001215 6.1e-06 53.9 50 56.0
Prupe.2G306800 Prunus persica HOM05D001384 ORTHO05D001215 6.1e-06 53.9 65 52.3
Atru.chr1.270 Acer truncatum HOM05D001384 ORTHO05D001215 8.0e-06 53.5 65 55.4
Cc02_g01910 Coffea canephora HOM05D001384 ORTHO05D001215 8.0e-06 53.5 58 65.5
Potri.001G094700 Populus trichocarpa HOM05D001384 ORTHO05D001215 8.0e-06 53.5 34 79.4


User provided reference genes

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