Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 7.4e-52 206.8 98 100.0
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 3.4e-33 144.8 90 70.0
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 1.8e-29 132.5 100 63.0
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 1.5e-28 129.4 89 68.5
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 9.7e-28 126.7 89 62.9
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 9.7e-28 126.7 87 63.2
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 2.2e-27 125.6 87 59.8
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 3.7e-27 124.8 97 59.8
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 1.1e-26 123.2 77 68.8
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 1.8e-26 122.5 89 59.6
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 3.1e-26 121.7 87 57.5
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 9.1e-26 120.2 93 61.3
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 1.5e-25 119.4 95 53.7
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 1.5e-25 119.4 90 62.2
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 2.0e-25 119.0 104 55.8
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 2.6e-25 118.6 90 57.8
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 3.5e-25 118.2 111 55.9
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 3.5e-25 118.2 113 54.9
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 1.0e-24 116.7 111 52.3
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 1.7e-24 115.9 78 59.0
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.2e-24 115.5 102 52.0
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 3.8e-24 114.8 92 60.9
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 5.0e-24 114.4 111 51.4
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 1.1e-23 113.2 111 51.4
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 1.1e-23 113.2 102 52.0
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 1.1e-23 113.2 94 52.1
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 1.9e-23 112.5 99 56.6
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 1.9e-23 112.5 92 56.5
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 7.2e-23 110.5 99 55.6
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 9.4e-23 110.2 92 55.4
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 9.4e-23 110.2 90 57.8
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 1.2e-22 109.8 95 57.9
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 1.2e-22 109.8 96 54.2
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.6e-22 109.4 99 51.5
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.1e-22 109.0 107 54.2
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 2.7e-22 108.6 89 57.3
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 6.1e-22 107.5 107 53.3
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 1.4e-21 106.3 83 57.8
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 1.8e-21 105.9 92 55.4
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 8.8e-21 103.6 89 48.3
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 1.5e-20 102.8 96 46.9
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 1.5e-20 102.8 89 47.2
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 1.5e-20 102.8 89 47.2
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 7.4e-20 100.5 100 43.0
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 2.2e-19 99.0 94 48.9
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 3.7e-19 98.2 76 60.5
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 2.0e-17 92.4 82 51.2
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 2.6e-17 92.0 102 48.0
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 5.9e-17 90.9 93 49.5
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 1.3e-16 89.7 64 57.8
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 1.7e-16 89.4 69 55.1
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 2.2e-16 89.0 98 42.9
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 2.2e-16 89.0 99 45.5
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 6.5e-16 87.4 64 57.8
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 6.5e-16 87.4 64 57.8
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 6.5e-16 87.4 64 57.8
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 6.5e-16 87.4 103 41.7
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 8.5e-16 87.0 102 42.2
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 1.1e-15 86.7 82 46.3
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 1.1e-15 86.7 88 45.5
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 3.2e-15 85.1 96 44.8
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 5.5e-15 84.3 106 39.6
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 5.5e-15 84.3 106 39.6
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 5.5e-15 84.3 106 39.6
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 7.2e-15 84.0 106 40.6
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 7.2e-15 84.0 106 40.6
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 9.4e-15 83.6 70 52.9
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 9.4e-15 83.6 101 45.5
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 2.1e-14 82.4 98 43.9
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 3.6e-14 81.6 95 45.3
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 4.0e-13 78.2 59 54.2
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 8.8e-13 77.0 59 54.2
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 3.4e-12 75.1 59 52.5
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 3.4e-12 75.1 59 52.5
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 3.4e-12 75.1 94 39.4
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 9.8e-12 73.6 59 50.8
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 1.3e-11 73.2 84 41.7
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 1.3e-11 73.2 101 43.6
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 2.2e-11 72.4 102 41.2
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 3.1e-10 68.6 97 37.1
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 2.1e-06 55.8 50 48.0


User provided reference genes

Program Settings