Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 7.7e-214 746.9 379 100.0
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.3e-173 613.2 378 81.2
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 2.3e-173 612.5 380 81.3
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 5.9e-166 587.8 379 77.3
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.7e-165 586.3 379 76.3
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 6.6e-165 584.3 379 75.7
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 2.5e-164 582.4 379 76.0
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 1.6e-163 579.7 379 76.0
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 1.4e-162 576.6 379 76.3
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 6.8e-162 574.3 379 75.2
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 8.9e-162 573.9 379 76.3
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 8.9e-162 573.9 379 74.9
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 8.9e-162 573.9 379 74.9
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 8.9e-162 573.9 377 75.6
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 1.2e-161 573.5 380 76.3
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 1.2e-161 573.5 383 75.5
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 2.6e-161 572.4 389 76.6
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 3.4e-161 572.0 380 76.1
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 5.8e-161 571.2 379 75.5
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 5.8e-161 571.2 407 71.0
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 7.5e-161 570.9 381 76.1
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 1.3e-160 570.1 379 74.9
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 1.3e-160 570.1 380 75.0
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 1.7e-160 569.7 373 76.9
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 2.2e-160 569.3 379 74.7
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 3.7e-160 568.5 380 75.8
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 6.4e-160 567.8 379 74.9
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 6.4e-160 567.8 379 75.5
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 1.1e-159 567.0 379 74.9
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 1.1e-159 567.0 379 73.9
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 2.3e-157 559.3 380 73.7
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 3.0e-157 558.9 409 70.7
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 3.0e-157 558.9 403 71.5
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 3.9e-157 558.5 380 73.9
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 6.6e-157 557.8 380 73.9
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 1.9e-156 556.2 380 75.5
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 7.3e-156 554.3 380 72.9
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 9.5e-156 553.9 379 72.8
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 1.2e-155 553.5 383 73.6
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 1.6e-155 553.1 399 71.4
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.1e-154 550.4 379 73.9
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 1.8e-154 549.7 380 73.7
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 2.3e-154 549.3 379 71.8
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 2.3e-154 549.3 379 73.1
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 2.3e-154 549.3 383 72.8
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 6.8e-154 547.7 389 71.0
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 8.9e-154 547.4 379 72.0
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 3.4e-153 545.4 379 70.7
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 1.3e-152 543.5 377 71.6
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 1.7e-152 543.1 434 65.9
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 2.2e-152 542.7 379 72.8
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 2.9e-152 542.3 379 72.0
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 3.7e-152 542.0 385 71.7
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 4.9e-152 541.6 377 72.1
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 8.3e-152 540.8 380 72.6
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 1.1e-151 540.4 379 71.8
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 2.4e-151 539.3 432 65.7
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 9.2e-151 537.3 379 72.3
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 1.6e-150 536.6 379 71.5
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 2.1e-150 536.2 379 71.2
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 2.1e-150 536.2 379 70.7
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 1.0e-149 533.9 379 71.5
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 1.0e-149 533.9 379 69.9
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 1.7e-149 533.1 377 72.1
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 3.9e-149 531.9 375 71.7
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 3.9e-149 531.9 432 65.5
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 8.6e-149 530.8 380 72.1
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 1.1e-148 530.4 379 69.9
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 1.9e-148 529.6 380 69.2
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 1.9e-148 529.6 362 74.9
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 1.9e-148 529.6 379 69.9
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 4.3e-148 528.5 381 71.7
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 4.3e-148 528.5 379 70.7
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 4.3e-148 528.5 380 71.8
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 9.5e-148 527.3 384 70.1
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 3.6e-147 525.4 356 73.9
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 4.7e-147 525.0 381 70.9
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 4.7e-147 525.0 380 70.5
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 4.7e-147 525.0 381 70.9
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 8.1e-147 524.2 404 67.1
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 2.4e-146 522.7 378 69.0
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 6.8e-146 521.2 379 69.7
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 1.1e-143 513.8 379 68.1
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.4e-143 513.5 412 65.3
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 1.0e-141 507.3 397 66.5
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 3.0e-141 505.8 382 67.3
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 5.1e-141 505.0 324 77.8
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 5.6e-140 501.5 379 67.3
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 2.1e-139 499.6 382 65.2
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 4.7e-139 498.4 388 67.3
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 1.1e-138 497.3 388 67.3
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 5.2e-138 495.0 380 65.8
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 8.4e-136 487.6 379 66.0
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 2.5e-132 476.1 379 63.6
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 2.1e-131 473.0 382 64.1
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 8.1e-131 471.1 459 55.3
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 6.0e-126 454.9 331 69.2
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 1.3e-123 447.2 384 62.8
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 2.4e-122 443.0 410 60.0
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 2.9e-120 436.0 382 61.3
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 8.4e-120 434.5 382 59.9
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 1.1e-116 424.1 387 58.1
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 2.4e-114 416.4 277 78.0
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 2.6e-113 412.9 276 77.5
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 2.6e-105 386.3 388 55.9
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 2.7e-73 280.0 244 61.9
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 3.8e-72 276.2 413 40.2
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.3e-64 250.4 158 78.5
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 3.8e-64 249.6 460 36.1
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 8.6e-64 248.4 158 78.5
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 3.6e-62 243.0 158 77.2
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.1e-50 204.9 158 67.1
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 2.4e-50 203.8 339 38.3
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.3e-45 187.2 148 66.2
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 1.0e-40 171.8 140 58.6
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.3e-40 171.4 129 65.1
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.1e-39 168.3 126 66.7
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 3.7e-35 153.3 102 65.7
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 4.3e-31 139.8 109 67.9
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 4.3e-31 139.8 103 62.1
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 5.8e-28 129.4 86 76.7
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 3.2e-26 123.6 95 67.4
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 4.5e-12 76.6 167 31.1
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 5.8e-12 76.3 124 38.7
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 2.7e-09 67.4 39 82.1
Lj9A174G23 Lonicera japonica HOM05D002866 ORTHO05D234197 6.0e-09 66.2 116 38.8
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 6.0e-09 66.2 39 79.5
GSVIVG01032303001 Vitis vinifera HOM05D002866 ORTHO05D440048 2.5e-07 60.8 33 81.8
Gorai.001G122500 Gossypium raimondii HOM05D000892 ORTHO05D000750 1.6e-06 58.2 224 26.8
MCO14G301 Micromonas commoda HOM05D002866 ORTHO05D269938 1.6e-06 58.2 147 27.9
QL01p012113 Quercus lobata HOM05D000892 ORTHO05D000750 2.1e-06 57.8 163 28.8
Gohir.D07G114200 Gossypium hirsutum HOM05D000892 ORTHO05D000750 2.8e-06 57.4 224 27.2
Cfa010004 Carpinus fangiana HOM05D000892 ORTHO05D000750 3.7e-06 57.0 159 28.3
Ca_01656_v3 Cicer arietinum L. HOM05D000892 ORTHO05D000750 3.7e-06 57.0 159 28.9
Lj9C161T2 Lonicera japonica HOM05D002866 ORTHO05D234048 4.8e-06 56.6 116 37.1
CiPaw.13G134800 Carya illinoinensis HOM05D000892 ORTHO05D000750 6.2e-06 56.2 159 28.9
HanXRQChr08g0229831 Helianthus annuus HOM05D000892 ORTHO05D000750 6.2e-06 56.2 159 27.7
EL10Ac7g15834 Beta vulgaris HOM05D000892 ORTHO05D000750 8.1e-06 55.8 163 28.8
ClCG02G022230 Citrullus lanatus HOM05D000892 ORTHO05D000750 8.1e-06 55.8 159 27.7
Gohir.A07G110550 Gossypium hirsutum HOM05D000892 ORTHO05D000750 8.1e-06 55.8 224 26.8


User provided reference genes

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