Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 7.3e-69 263.8 141 100.0
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.2e-55 219.9 141 84.4
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.2e-55 219.9 141 84.4
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.6e-55 218.0 141 84.4
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 2.3e-54 215.7 141 83.7
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.0e-54 215.3 141 83.7
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 3.0e-54 215.3 141 84.4
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.7e-54 214.2 141 83.0
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.5e-53 213.0 141 82.3
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.5e-53 212.2 141 82.3
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.3e-53 211.8 141 81.6
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 4.3e-53 211.5 141 82.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 4.3e-53 211.5 141 81.6
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 7.4e-53 210.7 141 81.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 9.6e-53 210.3 141 80.1
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 9.6e-53 210.3 141 81.6
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.3e-52 209.9 141 78.7
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.3e-52 209.9 141 81.6
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.6e-52 209.5 141 80.9
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.6e-52 209.5 141 80.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 2.8e-52 208.8 141 80.9
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.6e-52 208.4 141 80.1
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 4.8e-52 208.0 141 81.6
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 4.8e-52 208.0 141 80.9
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 6.2e-52 207.6 141 80.1
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 6.2e-52 207.6 142 79.6
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.1e-52 207.2 141 80.1
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 8.1e-52 207.2 141 81.6
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 8.1e-52 207.2 141 80.1
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.1e-51 206.8 141 80.1
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.1e-51 206.8 141 80.9
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.1e-51 206.8 143 79.7
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.4e-51 206.5 141 80.1
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.4e-51 206.5 141 80.1
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 2.4e-51 205.7 141 79.4
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.4e-51 205.7 143 79.0
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.4e-51 205.7 141 81.6
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.1e-51 205.3 141 80.1
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 3.1e-51 205.3 141 78.7
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 3.1e-51 205.3 141 80.1
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 3.1e-51 205.3 141 78.0
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 3.1e-51 205.3 141 78.7
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.1e-51 205.3 141 79.4
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 5.3e-51 204.5 141 80.1
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 6.9e-51 204.1 143 77.6
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 6.9e-51 204.1 141 78.7
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 9.0e-51 203.8 140 78.6
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.2e-50 203.4 141 80.1
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.2e-50 203.4 141 79.4
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.5e-50 203.0 141 79.4
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 2.0e-50 202.6 141 78.7
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.0e-50 202.6 141 78.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.0e-50 202.6 141 78.7
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 2.6e-50 202.2 141 78.0
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 2.6e-50 202.2 141 80.1
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.4e-50 201.8 141 78.7
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 3.4e-50 201.8 141 78.0
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 4.5e-50 201.4 141 77.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 4.5e-50 201.4 140 77.1
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.8e-50 201.1 141 78.0
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 7.6e-50 200.7 141 78.0
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 9.9e-50 200.3 140 77.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.7e-49 199.5 141 75.2
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.7e-49 199.5 140 76.4
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.9e-49 198.7 141 77.3
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 4.9e-49 198.0 141 74.5
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 4.9e-49 198.0 141 74.5
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.9e-49 198.0 141 77.3
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.1e-48 196.8 140 76.4
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.9e-48 196.1 141 78.0
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.4e-48 195.7 141 74.5
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.4e-48 195.7 149 73.2
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 3.2e-48 195.3 140 75.7
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 3.2e-48 195.3 140 76.4
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 5.5e-48 194.5 147 72.8
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.7e-47 192.2 151 71.5
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.7e-47 192.2 151 71.5
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.7e-47 192.2 141 73.8
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 3.5e-47 191.8 140 75.0
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 4.6e-47 191.4 164 66.5
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 6.0e-47 191.0 141 74.5
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.0e-46 190.3 148 73.0
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.3e-46 189.9 141 74.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.3e-46 189.9 141 74.5
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.8e-46 189.5 141 72.3
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 5.1e-46 188.0 152 70.4
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.1e-46 188.0 144 72.9
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 8.7e-46 187.2 141 73.8
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.1e-45 186.8 155 69.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-45 186.8 155 69.0
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.5e-45 186.4 141 71.6
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.9e-45 186.0 137 75.2
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.9e-45 186.0 144 72.2
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.9e-45 186.0 160 65.6
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 5.6e-45 184.5 141 71.6
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 5.6e-45 184.5 142 71.8
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.3e-44 183.3 168 63.1
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 4.8e-44 181.4 146 69.9
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 6.2e-44 181.0 141 72.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 6.2e-44 181.0 148 69.6
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.4e-43 179.9 155 67.1
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.8e-43 179.5 175 60.6
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.5e-42 176.4 176 59.7
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 2.0e-42 176.0 137 72.3
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.0e-42 176.0 141 70.2
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 3.4e-42 175.3 141 69.5
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.9e-41 172.2 141 68.1
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.4e-40 169.9 139 68.3
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 5.5e-40 167.9 115 81.7
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.5e-39 165.2 115 80.0
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 6.0e-39 164.5 139 64.7
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.9e-38 161.8 116 75.0
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.4e-37 157.5 118 76.3
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.3e-36 156.8 119 72.3
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 8.2e-36 154.1 141 58.2
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-35 153.7 137 65.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 9.0e-35 150.6 137 66.4
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.0e-34 149.4 169 52.1
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-33 147.1 117 70.9
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.3e-33 146.7 141 58.9
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.8e-33 145.2 115 71.3
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.9e-32 142.9 111 73.0
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 4.2e-32 141.7 128 67.2
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 7.9e-31 137.5 170 52.4
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.3e-30 136.0 139 55.4
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 4.3e-29 131.7 155 53.5
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 7.4e-29 131.0 131 60.3
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.8e-28 129.0 117 66.7
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 2.8e-28 129.0 98 72.4
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.7e-28 128.6 81 86.4
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.1e-27 125.6 80 85.0
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.9e-27 124.4 80 83.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.6e-26 122.5 80 82.5
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 3.4e-26 122.1 140 56.4
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-25 120.2 121 57.9
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.3e-25 120.2 77 84.4
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 2.9e-25 119.0 138 52.9
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.9e-25 119.0 76 85.5
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 8.5e-25 117.5 138 52.9
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-23 113.6 87 71.3
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 6.1e-23 111.3 87 70.1
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 6.7e-22 107.8 69 78.3
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 1.1e-21 107.1 69 81.2
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 4.8e-20 101.7 134 49.3
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.2e-17 92.8 72 69.4
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 6.5e-17 91.3 100 58.0
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 7.2e-16 87.8 69 69.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 3.6e-15 85.5 77 66.2
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.4e-14 83.6 57 78.9
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.4e-14 83.6 60 73.3
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.3e-12 77.0 84 56.0
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 6.3e-12 74.7 133 39.8
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 8.2e-12 74.3 71 60.6
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 8.2e-12 74.3 71 60.6
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 3.5e-10 68.9 44 75.0
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.5e-08 62.8 49 65.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 3.2e-08 62.4 51 62.7
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 5.5e-08 61.6 51 62.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 2.3e-06 56.2 97 44.3
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 2.3e-06 56.2 97 44.3
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 5.2e-06 55.1 37 73.0
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 5.2e-06 55.1 37 73.0
PRCOL_00001918 Prasinoderma coloniale HOM05D004301 ORTHO05D005124 6.7e-06 54.7 138 31.2


User provided reference genes

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