Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 1.0e-238 829.7 421 100.0
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 2.6e-231 805.1 411 99.5
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 6.7e-227 790.4 411 97.8
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 1.2e-130 470.7 412 58.3
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 1.1e-125 454.1 238 96.2
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 6.3e-124 448.4 411 56.9
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 2.4e-123 446.4 407 56.5
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 2.6e-122 443.0 409 57.2
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 2.6e-122 443.0 405 56.8
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 2.6e-122 443.0 406 56.2
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 2.6e-122 443.0 406 56.2
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 1.7e-121 440.3 413 55.7
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 1.4e-120 437.2 410 55.1
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 7.2e-120 434.9 412 55.3
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 1.2e-119 434.1 409 57.2
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 6.1e-119 431.8 415 53.7
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 1.9e-117 426.8 410 54.6
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 8.2e-116 421.4 411 55.5
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 4.1e-115 419.1 411 53.5
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 6.9e-115 418.3 412 51.9
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 1.2e-114 417.5 411 52.1
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.5e-114 417.2 424 51.9
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 3.4e-114 416.0 417 52.8
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 4.5e-114 415.6 414 55.1
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 3.8e-113 412.5 414 51.9
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 9.4e-112 407.9 412 53.4
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 3.9e-110 402.5 423 51.5
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 5.1e-110 402.1 409 52.3
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 5.1e-110 402.1 418 51.4
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 4.4e-109 399.1 418 51.2
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 1.3e-108 397.5 417 49.9
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 1.7e-108 397.1 417 49.2
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 1.8e-107 393.7 419 50.1
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 4.1e-107 392.5 409 51.1
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 3.4e-106 389.4 418 50.2
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 1.3e-105 387.5 314 63.1
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 2.2e-105 386.7 421 49.6
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 5.0e-105 385.6 451 49.0
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 8.5e-105 384.8 415 49.6
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 1.1e-104 384.4 415 49.4
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 1.1e-104 384.4 412 50.2
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 1.1e-104 384.4 412 50.2
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 4.2e-104 382.5 419 51.6
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 2.1e-103 380.2 413 50.1
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 8.0e-103 378.3 421 47.5
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 1.0e-102 377.9 411 48.9
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 1.8e-102 377.1 411 48.9
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 3.0e-102 376.3 314 60.5
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 8.8e-102 374.8 412 48.1
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 3.3e-101 372.9 444 45.3
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 5.7e-101 372.1 412 47.3
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 1.7e-100 370.5 411 48.4
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 2.8e-100 369.8 412 49.3
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 1.1e-99 367.9 416 47.6
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 9.1e-99 364.8 424 47.2
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 1.7e-97 360.5 413 46.7
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 2.2e-97 360.1 407 48.9
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 5.0e-97 359.0 412 47.6
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 6.5e-97 358.6 426 46.0
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 9.4e-96 354.8 424 45.8
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 1.6e-95 354.0 415 46.7
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 3.2e-88 329.7 415 44.3
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 4.5e-82 309.3 415 41.9
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 8.6e-81 305.1 407 44.0
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 1.9e-80 303.9 368 44.6
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 2.1e-79 300.4 424 41.0
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 3.0e-78 296.6 413 41.2
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 9.8e-77 291.6 416 41.3
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 2.8e-76 290.0 444 40.1
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 4.5e-74 282.7 254 58.3
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 1.0e-73 281.6 417 39.3
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 1.0e-73 281.6 417 39.3
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 2.3e-73 280.4 421 37.3
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 2.0e-69 267.3 416 42.8
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 8.3e-68 261.9 468 35.5
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 6.6e-65 252.3 418 38.8
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 1.1e-64 251.5 474 36.7
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 6.2e-63 245.7 421 38.5
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 2.9e-60 236.9 366 40.2
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.1e-59 235.0 258 51.2
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 1.4e-59 234.6 253 48.6
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 9.2e-59 231.9 408 36.5
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 2.1e-58 230.7 402 38.6
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 1.3e-57 228.0 364 38.2
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 5.1e-57 226.1 415 35.2
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 5.1e-57 226.1 414 35.3
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.9e-56 224.2 194 60.3
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 1.9e-56 224.2 408 35.5
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 2.3e-54 217.2 257 46.7
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 2.3e-49 200.7 199 53.8
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 3.0e-49 200.3 224 49.1
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 3.9e-41 173.3 323 34.4
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 3.1e-38 163.7 251 39.0
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 3.4e-37 160.2 266 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 2.9e-36 157.1 286 33.9
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 4.6e-34 149.8 179 45.3
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 3.9e-33 146.7 402 31.8
Pp3c2_16400 Physcomitrium patens HOM05D006588 ORTHO05D008272 8.7e-33 145.6 484 23.8
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 6.9e-30 136.0 419 25.1
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 6.9e-30 136.0 434 25.6
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.2e-29 135.2 482 22.8
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 1.3e-28 131.7 432 23.1
Pp3c10_4240 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.0e-25 122.1 363 24.2
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.9e-24 117.9 285 28.4
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.2e-23 112.8 366 25.4
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 2.4e-22 110.9 122 47.5
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.3e-22 109.8 354 26.6
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.2e-21 108.6 262 26.3
Pp3c18_21550 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.0e-21 107.8 462 24.0
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 7.6e-21 105.9 379 22.4
Pp3c22_1680 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.5e-19 99.8 304 24.0
Pp3c21_1000 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.3e-15 88.6 321 23.7
unitig_699.g19308 Utricularia gibba HOM05D006588 ORTHO05D008272 1.2e-13 82.0 164 31.1
unitig_699.g19307 Utricularia gibba HOM05D006588 ORTHO05D008272 1.0e-12 79.0 124 41.9
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-10 71.6 66 51.5
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.0e-10 69.7 49 59.2
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.0e-10 69.7 49 59.2
Pp3s358_10 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.0e-10 69.7 183 26.2
SalBow8G2706 Salvia bowleyana HOM05D000076 ORTHO05D013329 1.0e-09 68.9 88 44.3
Glyma.05G223602 Glycine max HOM05D006588 ORTHO05D008272 3.9e-09 67.0 98 40.8
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.9e-09 67.0 65 49.2
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.3e-08 63.5 59 50.8
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 1.4e-06 58.5 439 23.2
SEGI_00100 Sequoiadendron giganteum HOM05D010869 ORTHO05D012699 2.4e-06 57.8 282 23.0
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 5.3e-06 56.6 420 22.9
Haze_18080 Corylus avellana HOM05D006588 ORTHO05D008272 5.3e-06 56.6 46 54.3
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 5.3e-06 56.6 422 23.2
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 9.0e-06 55.8 419 23.2


User provided reference genes

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