Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1960.7 987 100.0
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1932.5 988 98.7
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1757.3 992 90.5
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1469.5 993 75.1
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1463.4 993 74.5
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1460.7 995 73.4
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1443.7 991 73.2
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1443.3 994 73.2
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1439.9 993 73.1
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1437.9 994 73.3
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1437.2 994 72.6
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1436.8 991 73.1
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1432.2 993 73.1
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1430.6 992 72.3
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1429.1 992 72.7
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1427.9 992 72.1
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1425.2 992 72.2
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1424.8 994 72.1
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1424.5 957 74.3
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1424.5 994 72.4
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1423.3 992 71.9
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1420.6 993 71.8
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1418.3 993 72.4
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1417.5 993 72.2
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1415.6 993 72.1
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1414.8 986 71.5
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1409.4 994 71.0
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1409.4 991 71.0
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1408.3 995 71.5
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1407.1 992 72.0
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1406.0 999 70.9
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1405.6 992 71.2
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1405.6 989 70.9
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1402.1 992 71.0
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1399.8 991 70.6
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1398.6 993 69.2
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1395.9 991 71.2
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1395.9 994 71.2
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1393.3 994 71.2
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1392.5 994 71.2
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1392.1 992 71.2
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1391.3 994 70.1
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1389.0 992 71.1
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1388.2 993 70.2
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1386.3 994 70.5
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1385.2 992 70.3
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1385.2 991 70.9
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1385.2 991 70.9
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1384.0 993 69.9
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1382.9 991 70.4
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1380.9 996 69.7
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1380.5 993 70.1
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1379.8 994 70.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1378.2 993 69.9
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1374.8 991 70.4
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1372.5 1017 69.2
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1363.6 991 70.0
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1362.8 990 68.2
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1360.9 995 68.5
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1359.4 995 68.4
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1347.8 994 68.0
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1346.6 995 68.1
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1341.3 994 67.5
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1340.1 994 67.3
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1337.8 994 66.6
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1336.6 993 67.2
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1336.6 1007 68.3
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1336.2 994 67.6
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1334.7 993 67.9
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1332.4 993 67.6
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1330.1 994 67.1
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1328.9 993 67.0
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1328.9 998 66.1
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1328.9 994 66.9
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1327.8 993 66.8
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1327.0 992 66.9
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1326.2 994 67.2
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1326.2 992 67.0
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1325.1 994 67.1
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1323.9 995 66.6
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1323.5 992 66.2
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1323.5 992 65.6
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1322.4 993 66.8
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1322.4 1007 66.0
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1319.7 993 67.0
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1318.5 993 66.8
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1317.4 992 66.6
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1317.0 1013 65.6
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1315.8 992 66.1
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1313.5 992 65.5
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1312.4 991 66.5
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1312.0 992 66.3
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1309.7 960 68.2
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1308.9 1023 65.5
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1308.1 995 65.2
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1306.6 993 65.9
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1306.6 992 65.9
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1301.6 992 64.9
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1301.2 993 66.6
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1300.8 1020 65.1
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1300.8 994 66.3
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1295.0 1088 62.1
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1286.6 997 64.7
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1283.9 907 71.6
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1281.2 1087 61.6
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1280.8 960 65.9
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1258.8 1009 64.0
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1258.8 985 64.7
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1256.1 993 64.1
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1254.6 994 64.1
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1236.5 974 65.1
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1212.6 975 63.1
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1206.8 994 62.8
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1202.2 994 61.8
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1196.8 992 62.4
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1179.1 854 69.6
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1176.4 997 59.1
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1169.5 1021 59.5
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1166.0 905 65.0
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1153.7 971 58.7
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1149.4 971 58.5
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1088.2 958 59.2
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1087.8 852 62.4
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 3.4e-311 1071.6 886 61.1
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 3.7e-308 1061.6 814 64.7
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.1e-285 986.9 981 51.5
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 5.9e-274 948.0 1001 49.0
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 6.7e-270 934.5 659 71.6
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 3.7e-244 849.0 955 48.1
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 6.0e-242 841.6 544 76.5
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.3e-233 813.1 693 58.2
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.7e-220 770.4 659 60.2
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.4e-205 719.5 527 67.6
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 2.7e-202 709.9 896 43.3
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.7e-180 637.5 811 46.7
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 8.2e-159 565.5 365 76.2
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.7e-146 523.1 424 63.4
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 4.7e-146 523.1 923 38.1
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 3.0e-137 493.8 298 82.2
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 6.3e-135 486.1 298 80.2
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 6.6e-132 476.1 282 81.6
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-131 473.0 855 34.4
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.0e-113 413.7 337 62.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.7e-109 401.0 257 77.8
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 5.1e-108 396.7 1035 29.4
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.6e-104 384.4 663 41.9
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.7e-100 371.7 1000 29.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.1e-86 325.9 322 52.2
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 8.7e-84 316.2 384 46.1
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.3e-76 292.4 259 57.9
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 1.3e-74 285.8 366 46.4
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 1.4e-73 282.3 431 38.5
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.0e-59 235.3 279 48.4
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 3.1e-57 228.0 147 80.3
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 3.6e-53 214.5 127 79.5
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 2.3e-52 211.8 184 57.6
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 3.0e-52 211.5 125 80.0
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.9e-47 194.9 125 76.0
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 4.7e-45 187.6 107 83.2
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.5e-43 182.6 142 65.5
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 3.8e-39 167.9 1029 21.9
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 5.5e-38 164.1 200 49.5
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 3.6e-37 161.4 105 72.4
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 3.6e-37 161.4 105 72.4
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 2.3e-36 158.7 105 71.4
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 5.0e-31 141.0 85 78.8
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 7.3e-22 110.5 149 49.7
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 2.8e-21 108.6 121 55.4
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.4e-20 106.3 81 61.7
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.7e-18 99.4 62 72.6
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 2.2e-18 99.0 77 59.7
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 3.7e-18 98.2 63 76.2
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 4.9e-18 97.8 72 70.8
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 5.4e-17 94.4 53 77.4
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.2e-16 93.2 168 36.9
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 1.7e-15 89.4 73 67.1
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 5.6e-14 84.3 121 41.3
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 5.6e-14 84.3 47 78.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 3.6e-13 81.6 140 37.9
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 4.0e-12 78.2 62 61.3
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.0e-11 75.9 97 46.4
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 7.5e-11 73.9 97 45.4
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 4.6e-08 64.7 116 35.3
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 1.3e-07 63.2 114 36.0
Psat6g121640 Pisum sativum HOM05D000840 ORTHO05D000670 3.0e-07 62.0 69 46.4


User provided reference genes

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