Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 6.4e-122 442.2 597 100.0
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 4.8e-69 266.5 194 75.3
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 1.7e-66 258.1 203 68.5
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 1.9e-65 254.6 203 68.5
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 4.2e-65 253.4 203 68.0
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 4.2e-65 253.4 203 69.5
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 8.7e-63 245.7 198 66.7
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 1.1e-62 245.4 204 65.7
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 7.4e-62 242.7 204 65.2
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 4.5e-59 233.4 205 63.9
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 1.3e-58 231.9 172 70.3
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 6.5e-58 229.6 204 63.2
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 1.4e-55 221.9 201 60.2
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 1.3e-53 215.3 196 59.7
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 2.2e-53 214.5 152 75.7
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 3.1e-52 210.7 198 58.1
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.1e-52 210.7 153 71.9
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 3.6e-48 197.2 205 57.6
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 2.2e-45 188.0 152 61.8
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 4.2e-41 173.7 152 61.2
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 5.5e-41 173.3 196 49.5
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 4.7e-40 170.2 193 53.4
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 8.0e-40 169.5 186 51.6
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 3.0e-39 167.5 148 59.5
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 6.7e-39 166.4 151 58.3
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 8.8e-39 166.0 204 51.5
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 1.4e-36 158.7 204 50.5
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 4.1e-36 157.1 204 50.0
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 5.3e-36 156.8 149 54.4
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 9.1e-36 156.0 151 57.0
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.6e-35 154.5 140 60.7
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 5.9e-35 153.3 195 48.7
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 5.0e-34 150.2 141 53.9
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.6e-32 145.2 203 45.3
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 5.2e-31 140.2 138 53.6
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 6.7e-31 139.8 152 50.0
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 3.3e-30 137.5 141 50.4
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 5.7e-30 136.7 139 52.5
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 5.7e-30 136.7 143 52.4
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 7.5e-30 136.3 138 52.2
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 7.5e-30 136.3 142 50.0
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 1.3e-29 135.6 141 48.9
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 1.3e-29 135.6 141 48.9
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 1.7e-29 135.2 141 48.2
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 1.7e-29 135.2 141 48.9
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.8e-29 134.4 154 50.6
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 6.3e-29 133.3 157 48.4
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 6.3e-29 133.3 155 49.7
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 8.3e-29 132.9 97 67.0
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 8.3e-29 132.9 154 50.6
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 8.3e-29 132.9 145 50.3
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 2.4e-28 131.3 110 57.3
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 3.1e-28 131.0 141 48.2
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 1.2e-27 129.0 138 47.8
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 1.6e-27 128.6 158 45.6
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.6e-27 128.6 141 47.5
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 7.7e-27 126.3 138 47.1
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 2.9e-26 124.4 141 48.2
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 8.5e-26 122.9 110 52.7
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 1.1e-25 122.5 132 46.2
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 1.9e-25 121.7 139 47.5
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 2.5e-25 121.3 110 52.7
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 4.2e-25 120.6 110 51.8
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 1.6e-24 118.6 146 50.7
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.7e-24 117.1 149 47.7
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 8.0e-24 116.3 156 48.7
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 8.0e-24 116.3 156 42.9
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 1.0e-23 115.9 136 43.4
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 3.0e-23 114.4 149 48.3
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 4.0e-23 114.0 133 49.6
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 4.0e-23 114.0 133 49.6
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.2e-22 112.5 112 47.3
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 1.5e-22 112.1 124 50.0
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.5e-22 112.1 117 53.8
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 3.4e-22 110.9 165 42.4
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 4.4e-22 110.5 111 48.6
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.4e-22 110.5 152 39.5
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 9.8e-22 109.4 116 53.4
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 2.8e-21 107.8 112 49.1
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 3.1e-20 104.4 112 47.3
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 3.1e-20 104.4 115 51.3
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 9.1e-20 102.8 145 46.9
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 2.7e-19 101.3 111 45.9
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 5.9e-19 100.1 114 48.2
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 1.0e-18 99.4 111 49.5
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 1.7e-18 98.6 124 46.0
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 1.7e-18 98.6 151 43.7
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 2.3e-18 98.2 133 39.8
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 2.3e-18 98.2 157 42.7
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 2.9e-18 97.8 149 38.9
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 5.0e-18 97.1 112 43.8
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 8.6e-18 96.3 145 40.7
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 8.6e-18 96.3 145 40.7
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 1.9e-17 95.1 152 39.5
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 3.3e-17 94.4 98 58.2
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 5.5e-17 93.6 151 39.7
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 9.5e-17 92.8 82 51.2
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 1.2e-16 92.4 150 42.7
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 1.2e-16 92.4 132 41.7
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 2.8e-16 91.3 150 42.0
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 4.7e-16 90.5 150 42.0
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.8e-15 88.6 108 40.7
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 5.2e-15 87.0 151 41.7
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 6.8e-15 86.7 151 38.4
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 9.8e-14 82.8 111 44.1
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.7e-13 82.0 114 39.5
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.7e-13 82.0 114 39.5
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 2.8e-13 81.3 86 48.8
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 2.8e-13 81.3 151 41.1
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 1.4e-12 79.0 89 46.1
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 7.0e-12 76.6 80 48.8
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 1.3e-10 72.4 64 54.7
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 2.5e-09 68.2 102 36.3


User provided reference genes

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