Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.4e-309 1065.4 532 100.0
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 8.8e-224 780.4 551 73.5
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.5e-223 779.6 551 73.3
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.2e-218 761.9 549 70.9
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.0e-216 756.9 549 70.9
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 7.7e-212 740.7 544 70.4
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 2.2e-211 739.2 547 70.2
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 2.2e-211 739.2 567 69.0
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 6.5e-211 737.6 549 69.9
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.1e-210 736.9 549 69.9
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 3.2e-210 735.3 550 70.0
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 4.2e-210 734.9 544 69.5
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.4e-208 729.9 547 69.3
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 8.8e-208 727.2 548 69.0
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 4.8e-206 721.5 528 70.5
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 8.3e-206 720.7 439 80.0
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 3.1e-205 718.8 543 68.9
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 7.0e-205 717.6 550 67.8
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 7.7e-204 714.1 517 70.8
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.2e-203 712.6 449 75.9
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.9e-203 712.2 553 66.5
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 2.9e-203 712.2 545 67.5
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 8.5e-203 710.7 430 79.3
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 1.9e-202 709.5 544 68.4
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 2.5e-202 709.1 545 68.6
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.5e-202 709.1 544 68.2
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 7.2e-202 707.6 544 68.0
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 9.4e-202 707.2 546 66.5
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 9.4e-202 707.2 422 80.1
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 9.4e-202 707.2 553 66.7
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 2.1e-201 706.1 543 67.4
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 4.7e-201 704.9 545 68.8
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 6.1e-201 704.5 545 67.9
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 3.0e-200 702.2 555 67.4
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 4.0e-200 701.8 499 70.7
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 8.8e-200 700.7 554 67.0
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 1.4e-197 693.3 553 66.0
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.4e-197 692.6 543 67.0
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 1.6e-196 689.9 550 67.1
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 3.8e-195 685.3 477 71.7
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.5e-194 683.3 551 64.2
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 9.5e-194 680.6 550 66.7
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.2e-193 680.2 438 73.5
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.8e-193 679.1 545 65.7
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 3.0e-192 675.6 481 70.9
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.5e-191 673.3 451 73.6
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 3.4e-191 672.2 429 76.2
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 5.7e-191 671.4 550 64.9
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 6.3e-190 667.9 527 67.0
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 6.3e-190 667.9 433 73.4
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.4e-189 666.8 549 64.3
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.4e-189 666.0 463 70.6
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 3.2e-189 665.6 544 65.4
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 3.2e-189 665.6 423 76.4
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.1e-189 665.2 548 63.5
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 4.1e-189 665.2 512 65.6
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 9.2e-189 664.1 548 63.3
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 2.0e-188 662.9 548 65.0
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.0e-188 662.9 475 70.3
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 4.5e-188 661.8 467 70.0
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.9e-187 658.7 512 65.4
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 6.6e-187 657.9 518 64.7
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 6.6e-187 657.9 485 68.5
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.1e-186 657.1 530 63.6
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 2.5e-186 656.0 439 72.7
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 3.3e-186 655.6 545 63.1
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 3.3e-186 655.6 470 70.2
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 3.3e-186 655.6 470 70.2
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 4.3e-186 655.2 424 74.5
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 4.3e-186 655.2 530 63.4
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 5.6e-186 654.8 545 63.7
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 9.5e-186 654.1 547 62.9
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 9.5e-186 654.1 530 63.2
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.2e-185 653.7 464 69.8
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.2e-185 653.7 464 69.8
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 2.8e-185 652.5 488 67.2
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 8.0e-185 651.0 545 62.6
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 8.0e-185 651.0 545 63.9
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.4e-184 650.2 528 64.8
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.4e-184 650.2 528 64.8
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 5.2e-184 648.3 514 65.4
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 8.9e-184 647.5 532 64.5
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 8.9e-184 647.5 532 64.5
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.2e-183 647.1 508 65.7
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.2e-183 647.1 514 64.6
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.0e-183 646.4 506 66.4
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 2.0e-183 646.4 429 73.4
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 9.8e-183 644.0 513 66.7
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 1.3e-182 643.7 547 62.3
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 4.1e-181 638.6 461 68.5
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.0e-181 637.9 548 63.9
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 9.2e-181 637.5 609 58.5
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.2e-181 637.5 548 63.9
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 9.2e-181 637.5 418 73.4
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.0e-180 636.3 513 65.3
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.5e-178 630.2 515 66.4
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.5e-178 630.2 461 69.2
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-178 629.8 461 69.0
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.6e-177 626.7 559 62.1
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 3.6e-177 625.5 655 54.2
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-176 622.9 514 65.6
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.9e-174 615.9 601 57.2
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.4e-173 612.8 548 60.8
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 6.0e-172 608.2 500 65.0
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 6.0e-172 608.2 482 63.7
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 4.3e-170 602.1 459 68.8
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.1e-168 597.4 621 55.6
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.5e-167 593.6 432 69.0
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 9.9e-167 590.9 531 58.4
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.1e-165 587.4 425 65.6
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 2.4e-165 586.3 450 66.4
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 3.0e-163 579.3 548 58.8
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 5.1e-163 578.6 357 77.6
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 1.5e-162 577.0 560 57.5
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.9e-162 576.6 461 66.8
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 4.3e-162 575.5 640 53.8
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 6.2e-161 571.6 524 59.7
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 8.1e-161 571.2 543 53.4
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.4e-159 565.8 420 65.2
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 8.4e-158 561.2 370 71.1
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.4e-157 559.7 461 65.9
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 3.5e-156 555.8 444 63.7
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.5e-154 550.4 452 59.3
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.5e-154 550.4 563 55.8
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 7.3e-154 548.1 432 67.8
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 7.3e-154 548.1 428 63.3
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 6.2e-153 545.0 417 65.0
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.4e-152 543.9 395 68.9
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 3.4e-151 539.3 547 55.9
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.9e-149 533.5 466 59.7
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 5.4e-149 531.9 492 58.1
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.1e-144 517.7 467 60.4
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 4.9e-142 508.8 362 71.3
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 8.4e-142 508.1 357 72.0
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.4e-141 507.3 437 63.4
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 7.1e-141 505.0 347 72.3
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.7e-140 503.1 353 69.1
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.5e-138 496.5 371 69.5
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 8.1e-137 491.5 439 60.6
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 6.9e-136 488.4 341 67.7
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.5e-135 487.3 393 64.1
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 5.8e-135 485.3 564 52.5
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.2e-132 477.6 401 60.6
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.9e-126 456.4 402 62.9
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 7.9e-124 448.4 359 61.3
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 8.2e-121 438.3 415 61.4
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 4.1e-120 436.0 436 56.0
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.5e-111 407.5 282 71.6
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.2e-102 377.1 211 82.9
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 8.8e-91 338.6 434 43.1
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.5e-77 293.9 326 53.4
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.3e-73 281.6 297 54.5
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 3.0e-70 270.4 332 50.3
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 8.6e-70 268.9 290 56.2
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.4e-67 261.5 155 80.6
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 2.9e-65 253.8 145 80.0
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 3.4e-58 230.3 193 57.0
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.1e-56 225.3 252 55.6
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 7.3e-53 212.6 160 57.5
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.5e-53 212.2 445 36.2
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.8e-52 210.7 406 32.0
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.1e-47 194.5 456 30.9
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.0e-35 153.7 103 68.9
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 4.8e-20 103.6 51 92.2
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 1.8e-19 101.7 49 91.8
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.5e-18 98.6 49 87.8
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.7e-17 95.1 162 32.7
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.1e-16 92.4 142 47.9
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.9e-14 84.0 253 29.6
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 3.1e-11 74.3 63 54.0


User provided reference genes

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